Pre_GI: BLASTP Hits

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Query: NC_011080:1166951:1176525 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1176525, End: 1176944, Length: 420

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011741:2715246:272383227238322724479648Escherichia coli IAI1 chromosome, complete genomehypothetical protein8e-75278
CU928160:2715246:272383227238322724479648Escherichia coli IAI1 chromosome, complete genomehypothetical protein8e-75278
NC_014500:3097362:316302431630243163680657Dickeya dadantii 3937 chromosome, complete genomehypothetical protein6e-56215
NC_013282:923500:930833930833931468636Cronobacter turicensis, complete genomehypothetical protein2e-0857.4
NC_015388:719669:727834727834728451618Desulfobacca acetoxidans DSM 11109 chromosome, complete genomehypothetical protein5e-0753.1