Pre_GI: BLASTP Hits

Some Help

Query: NC_011080:1166951:1171307 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1171307, End: 1171987, Length: 681

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010102:1829357:184340018434001844080681Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-125447
NC_003198:1867456:189151518915151892195681Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative bacteriophage protein5e-124443
NC_011741:2715246:272786027278602728540681Escherichia coli IAI1 chromosome, complete genomehypothetical protein5e-104376
CU928160:2715246:272786027278602728540681Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein from bacteriophage origin5e-104376
NC_016845:2306744:231686323168632317531669Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative bacteriophage protein4e-57221
NC_007712:3067000:307649630764963077149654Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein6e-47187
NC_007712:2806500:282694828269482827601654Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein6e-47187
NC_007712:1893066:190907119090711909724654Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein6e-47187
NC_009255:1369200:138497713849771385639663Burkholderia vietnamiensis G4 chromosome 2, complete sequenceputative bacteriophage protein4e-46184
NC_009720:4033983:406940640694064070110705Xanthobacter autotrophicus Py2, complete genomeputative bacteriophage protein2e-35148
NC_013008:306953:308198308198308509312Escherichia coli O157:H7 str. TW14359 chromosome, complete genomereplication protein P for prophage CP-933H7e-34144
NC_011353:305820:308198308198308509312Escherichia coli O157:H7 str. EC4115 chromosome, complete genomereplication protein P for prophage CP-933H7e-34144
NC_002655:301940:304318304318304629312Escherichia coli O157:H7 EDL933, complete genomepartial replication protein P for prophage CP-933H7e-34144
NC_020211:2123819:213181221318122132390579Serratia marcescens WW4, complete genomeputative bacteriophage protein4e-31134
NC_007712:3382000:338206233820623382718657Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein5e-0858.2