Pre_GI: BLASTP Hits

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Query: NC_011080:1166951:1170111 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1170111, End: 1171310, Length: 1200

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:1867456:1892192189219218933911200Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative bacteriophage protein0763
NC_010102:1829357:1844077184407718452761200Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein0683
NC_011741:2715246:2728537272853727297361200Escherichia coli IAI1 chromosome, complete genomehypothetical protein0635
CU928160:2715246:2728537272853727297361200Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein from bacteriophage origin0635
NC_016845:2306744:2315565231556523167611197Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative bacteriophage protein3e-156551
NC_020211:2123819:2130625213062521318151191Serratia marcescens WW4, complete genomebacteriophage protein6e-107387
NC_007712:3067000:3077146307714630783361191Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein3e-105382
NC_007712:2806500:2827598282759828287881191Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein3e-105382
NC_007712:1893066:1907848190784819090741227Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein6e-105381
NC_009720:4033983:4068237406823740694061170Xanthobacter autotrophicus Py2, complete genomeputative bacteriophage protein9e-95347
NC_009255:1369200:1383796138379613849771182Burkholderia vietnamiensis G4 chromosome 2, complete sequenceputative bacteriophage protein6e-87321
NC_004668:1427674:1438110143811014392641155Enterococcus faecalis V583, complete genomehypothetical protein1e-29131
NC_014976:2867454:2874715287471528758901176Bacillus subtilis BSn5 chromosome, complete genomehypothetical protein9e-25114
NC_003212:1713958:1719665171966517208161152Listeria innocua Clip11262, complete genomehypothetical protein7e-24112
NC_017191:2174741:2211649221164922128241176Bacillus amyloliquefaciens XH7 chromosome, complete genomehypothetical protein1e-22107
NC_017188:2172706:2209614220961422107891176Bacillus amyloliquefaciens TA208 chromosome, complete genomehypothetical protein1e-22107
NC_014722:846084:8805518805518817501200Burkholderia rhizoxinica HKI 454, complete genomehypothetical protein2e-1893.6
NC_016935:6435549:6457517645751764586921176Paenibacillus mucilaginosus 3016 chromosome, complete genomebaseplate protein4e-1789.4
NC_013171:896802:9282149282149294461233Anaerococcus prevotii DSM 20548, complete genomehypothetical protein6e-1685.5
NC_014121:3627588:3639832363983236410641233Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical bacteriophage protein4e-1479.7
NC_008343:1743500:1754159175415917556221464Granulibacter bethesdensis CGDNIH1, complete genomemu-like prophage FluMu protein gp479e-1478.2
NC_012214:1974500:1999211199921120003981188Erwinia pyrifoliae Ep1/96, complete genomePhage related-protein1e-1377.8
NC_016845:1285435:1331095133109513323271233Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein8e-0962
NC_011283:4170369:4187857418785741890891233Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein2e-0757