Pre_GI: BLASTP Hits

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Query: NC_011080:1166951:1169005 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1169005, End: 1169757, Length: 753

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011741:2715246:273008927300892730841753Escherichia coli IAI1 chromosome, complete genomehypothetical protein3e-120431
CU928160:2715246:273008927300892730841753Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein from phage origin3e-120431
NC_010102:1829357:184563018456301846367738Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein8e-95346
NC_016845:2306744:231455723145572315210654Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative bacteriophage protein3e-66251
NC_009255:1369200:138269813826981383438741Burkholderia vietnamiensis G4 chromosome 2, complete sequenceputative bacteriophage protein2e-59229
NC_020211:2123819:212951521295152130285771Serratia marcescens WW4, complete genomeputative bacteriophage protein4e-57221
NC_009720:4033983:406710840671084067770663Xanthobacter autotrophicus Py2, complete genomehypothetical protein2e-26119
NC_007712:3382000:338371133837113384394684Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein6e-25114
NC_008343:1743500:175809817580981758703606Granulibacter bethesdensis CGDNIH1, complete genomehypothetical protein9e-1270.9
NC_014722:846084:879537879537880178642Burkholderia rhizoxinica HKI 454, complete genomehypothetical protein3e-1065.5
NC_008343:1743500:174983517498351750437603Granulibacter bethesdensis CGDNIH1, complete genomehypothetical protein2e-0859.7
NC_012214:1974500:199818519981851998877693Erwinia pyrifoliae Ep1/96, complete genomePhage related-protein3e-0652.4