Pre_GI: BLASTP Hits

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Query: NC_011080:1166951:1166951 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 1166951, End: 1168018, Length: 1068

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011741:2715246:2731969273196927330361068Escherichia coli IAI1 chromosome, complete genomehypothetical protein0635
CU928160:2715246:2731969273196927330361068Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein from bacteriophage origin0635
NC_010102:1829357:1847909184790918489731065Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein9e-132470
NC_020211:2123819:2126736212673621277971062Serratia marcescens WW4, complete genomeputative bacteriophage protein1e-128459
NC_016845:2306744:2312299231229923133211023Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative bacteriophage protein2e-92339
NC_007712:3067000:307939030793903080370981Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein2e-89329
NC_007712:2806500:282984228298422830822981Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein2e-89329
NC_007712:2287053:231237623123762313356981Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein2e-89329
NC_009255:1369200:138132113813211382289969Burkholderia vietnamiensis G4 chromosome 2, complete sequencehypothetical protein2e-39163
NC_009720:4033983:406612540661254067105981Xanthobacter autotrophicus Py2, complete genomehypothetical protein2e-39163
NC_010505:2103887:211551421155142116482969Methylobacterium radiotolerans JCM 2831, complete genomehypothetical protein6e-1892