Pre_GI: BLASTP Hits

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Query: NC_011035:1908000:1913268 Neisseria gonorrhoeae NCCP11945 chromosome, complete genome

Start: 1913268, End: 1913855, Length: 588

Host Lineage: Neisseria gonorrhoeae; Neisseria; Neisseriaceae; Neisseriales; Proteobacteria; Bacteria

General Information: Neisseria gonorrhoeae NCCP11945 was isolated in 2002 from a vaginal smear of a Korean patient. This is a multidrug-resistant strain. One of two pathogenic Neisseria, this species causes the sexually transmitted disease (STD) gonorrhea, which is the leading reportable STD in adults in the USA. This human-specific organism colonizes and invades the mucosal surface of the urogenital epithelium, crosses the epithelial barrier, and ends up multiplying on the basement membrane. Pathogenic functions include the antigenically variable type IV pilus and the opacity (Opa) proteins. The Opa proteins are responsible for the opaque colony phenotype due to the tight junctions between adjacent Neisseria, and are also responsible for tight adherence to host cells. This organism, like Neisseria meningitidis, is also naturally competent for DNA uptake.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017511:1812000:181711118171111817698588Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeRNA polymerase sigma factor5e-113406
NC_002946:1902642:191875319187531919340588Neisseria gonorrhoeae FA 1090, complete genomeRNA polymerase sigma-70 factor5e-113406
NC_017512:2209000:221186422118642212451588Neisseria meningitidis WUE 2594, complete genomeputative ECF-family RNA polymerase sigma factor5e-112402
NC_008767:2160000:216543821654382166025588Neisseria meningitidis FAM18, complete genomeputative ECF-family RNA polymerase sigma factor2e-111400
NC_017516:2220000:222537622253762225963588Neisseria meningitidis H44/76 chromosome, complete genomeigma-70 family RNA polymerase sigma factor2e-110397
NC_015723:2550000:255027725502772550921645Cupriavidus necator N-1 chromosome 2, complete sequenceDNA-directed RNA polymerase sigma-24 subunit RpoE4e-33140
NC_008048:2838769:284525328452532845861609Sphingopyxis alaskensis RB2256, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-29129
NC_007650:2901751:290633829063382907165828Burkholderia thailandensis E264 chromosome II, complete sequencesigma-70 factor, putative4e-28124
NC_006349:2311817:231677523167752317380606Burkholderia mallei ATCC 23344 chromosome 2, complete sequenceRNA polymerase sigma-70 factor8e-27120
NC_009079:2339756:234409823440982344703606Burkholderia mallei NCTC 10247 chromosome I, complete sequenceRNA polymerase sigma-70 factor, TIGR02943 family8e-27120
NC_008835:1483237:148672614867261487331606Burkholderia mallei NCTC 10229 chromosome I, complete sequenceputative sigma-70 factor8e-27120
NC_008784:1151305:115718811571881157793606Burkholderia mallei SAVP1 chromosome I, complete sequenceRNA polymerase sigma-70 factor, TIGR02943 family8e-27120
NC_009078:3087759:309225630922563092861606Burkholderia pseudomallei 1106a chromosome II, complete sequenceRNA polymerase sigma-70 factor, TIGR02943 family1e-26119
NC_009075:3113393:311930131193013119906606Burkholderia pseudomallei 668 chromosome II, complete sequenceRNA polymerase sigma-70 factor, family1e-26119
NC_007435:1825741:183086818308681831473606Burkholderia pseudomallei 1710b chromosome II, complete sequenceRNA polymerase sigma-70 factor2e-26119
NC_006351:3159630:316471531647153165320606Burkholderia pseudomallei K96243 chromosome 2, complete sequenceRNA polymerase sigma-70 factor2e-26119
NC_010524:2761394:276364027636402764209570Leptothrix cholodnii SP-6, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-23106
NC_015942:763500:780566780566781198633Acidithiobacillus ferrivorans SS3 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit1e-1996.3
NC_012483:1408500:143868014386801439267588Acidobacterium capsulatum ATCC 51196, complete genomeRNA polymerase sigma factor, sigma-70 family5e-1994
NC_015850:1060000:106986110698611070457597Acidithiobacillus caldus SM-1 chromosome, complete genomeRNA polymerase sigma-70 factor1e-1686.3
NC_011830:3369282:338259733825973383103507Desulfitobacterium hafniense DCB-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1169.3
NC_007907:2306561:230812823081282308652525Desulfitobacterium hafniense Y51, complete genomehypothetical protein2e-1168.9
NC_020133:3787844:380841538084153809068654Mycobacterium liflandii 128FXT, complete genomealternative RNA polymerase sigma factor2e-1168.6
NC_019897:329945:346389346389346979591Thermobacillus composti KWC4 chromosome, complete genomesigma-70 family RNA polymerase sigma factor4e-1167.8
NC_012704:1747539:176790617679061768508603Corynebacterium kroppenstedtii DSM 44385, complete genomeECF-family sigma factor H1e-1066.6
NC_004193:1335626:133948713394871340014528Oceanobacillus iheyensis HTE831, complete genomeRNA polymerase ECF-type sigma factor2e-1065.5
NC_012214:1117325:114286111428611143436576Erwinia pyrifoliae Ep1/96, complete genomeRNA polymerase sigma E4e-1064.3
NC_005956:1572500:159013115901311590685555Bartonella henselae str. Houston-1, complete genomeRNA polymerase sigma-70 factor6e-1063.9
NC_014210:5752651:575645957564595757085627Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,RNA polymerase, sigma-24 subunit, ECF subfamily6e-1063.9
NC_010995:2547164:254810525481052548695591Cellvibrio japonicus Ueda107, complete genomeRNA polymerase sigma-H factor (Sigma-30)2e-0962.4
NC_011567:139598:151917151917152480564Anoxybacillus flavithermus WK1, complete genomeDNA-directed RNA polymerase specialized sigma subunit3e-0962
NC_015953:4908069:492497149249714925813843Streptomyces sp. SirexAA-E chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit3e-0961.6
NC_015846:369500:389672389672390220549Capnocytophaga canimorsus Cc5 chromosome, complete genomesigma-W factor5e-0960.8
NC_014666:5449884:545245454524545453449996Frankia sp. EuI1c chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-0960.5
NC_012660:165559:186028186028186600573Pseudomonas fluorescens SBW25 chromosome, complete genomeRNA polymerase sigma factor8e-0960.1
NC_010161:2050816:207017720701772070731555Bartonella tribocorum CIP 105476, complete genomeRNA polymerase sigma factor1e-0859.7
NC_020272:3706722:372792437279243728487564Bacillus amyloliquefaciens IT-45, complete genomeRNA polymerase sigma factor SigW2e-0859.3
NC_020410:198000:198744198744199307564Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeRNA polymerase ECF(Extracytoplasmic function)-type sigma factor W2e-0859.3
NC_014551:199500:199660199660200223564Bacillus amyloliquefaciens DSM 7, complete genomeRNA polymerase ECF(extracytoplasmic function)-type sigma factor W2e-0859.3
NC_017188:177500:177639177639178202564Bacillus amyloliquefaciens TA208 chromosome, complete genomeRNA polymerase sigma factor SigW2e-0859.3
NC_017190:182449:182449182449183012564Bacillus amyloliquefaciens LL3 chromosome, complete genomeRNA polymerase sigma factor2e-0859.3
NC_017191:183500:183549183549184112564Bacillus amyloliquefaciens XH7 chromosome, complete genomeRNA polymerase sigma factor SigW2e-0859.3
NC_004193:241480:250169250169250732564Oceanobacillus iheyensis HTE831, complete genomeRNA polymerase sigma-70 factor2e-0858.9
NC_012846:1888000:190443319044331904987555Bartonella grahamii as4aup, complete genomeRNA polymerase sigma factor2e-0858.5
NC_015064:2341152:236514523651452365786642Acidobacterium sp. MP5ACTX9 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0858.5
NC_007298:2170181:217566021756602176259600Dechloromonas aromatica RCB, complete genomeRNA polymerase sigma-70 factor4e-0858.2
NC_009659:1024201:102623410262341026812579Janthinobacterium sp. Marseille chromosome, complete genomeRNA polymerase sigma factor4e-0858.2
NC_020300:1344453:136080613608061361360555Bartonella australis Aust/NH1, complete genomeRNA polymerase sigma factor6e-0857.4
NC_012660:1579204:161309716130971613678582Pseudomonas fluorescens SBW25 chromosome, complete genomeRNA polymerase sigma factor AlgU6e-0857.4
NC_014815:5888934:589354558935455894543999Micromonospora sp. L5 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ecf subfamily6e-0857.4
NC_004129:195347:212505212505213086582Pseudomonas fluorescens Pf-5, complete genomeRNA polymerase sigma-70 factor6e-0857.4
NC_020301:1486695:150583015058301506384555Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genomeRNA polymerase sigma factor7e-0857
NC_012880:3241886:326005132600513260626576Dickeya dadantii Ech703, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-0857
NC_016935:4038265:405515440551544056110957Paenibacillus mucilaginosus 3016 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit9e-0856.6
NC_013929:5135285:515159451515945152304711Streptomyces scabiei 87.22 chromosome, complete genomesigma factor9e-0856.6
NC_010552:58294:958139581396517705Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily1e-0756.2
NC_008391:2045348:206876820687682069472705Burkholderia cepacia AMMD chromosome 2, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily1e-0756.2
NC_009614:1071548:108075110807511081263513Bacteroides vulgatus ATCC 8482 chromosome, complete genomeRNA polymerase ECF-type sigma factor1e-0756.2
NC_003155:5253923:527524952752495275962714Streptomyces avermitilis MA-4680, complete genomeRNA polymerase sigma-70 factor3e-0755.1
NC_003888:4251867:428257742825774283287711Streptomyces coelicolor A3(2), complete genomeRNA polymerase sigma-70 factor3e-0755.1
NC_012912:1200000:122636512263651226940576Dickeya zeae Ech1591, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0754.7
NC_009615:3581619:358324535832453583757513Parabacteroides distasonis ATCC 8503 chromosome, complete genomeRNA polymerase ECF-type sigma factor6e-0753.9
NC_014829:178000:186205186205186768564Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-0753.5
NC_012914:5225609:523278752327875233743957Paenibacillus sp. JDR-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0653.1
NC_014932:1232346:130281113028111303365555Bartonella clarridgeiae 73, complete genomeRNA polymerase sigma factor, ecr subfamily1e-0652.8
NC_011566:3994239:399821439982143998792579Shewanella piezotolerans WP3, complete genomeRNA polymerse sigmaE factor1e-0652.8
NC_008542:2631138:264774226477422648323582Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily1e-0652.8
NC_014650:1942935:196065919606591961171513Geobacillus sp. Y4.1MC1 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-0652.4
NC_018665:139646:154042154042154605564Exiguobacterium antarcticum B7 chromosome, complete genomeRNA polymerase sigma factor SigW2e-0652
NC_012483:1567253:158365615836561584234579Acidobacterium capsulatum ATCC 51196, complete genomeRNA polymerase sigma-70 factor, ECF subfamily2e-0652
NC_010556:141374:154091154091154654564Exiguobacterium sibiricum 255-15, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0651.2
NC_017506:3717261:372361437236143724159546Marinobacter adhaerens HP15 chromosome, complete genomeRNA polymerase sigma-70 domain-containing protein4e-0651.2
NC_007760:535825:551316551316552005690Anaeromyxobacter dehalogenans 2CP-C, complete genomesigma-24 (FecI-like)6e-0650.8
NC_012225:1657248:166270016627001663245546Brachyspira hyodysenteriae WA1, complete genomeR polymerase sigma-70 factor 27e-0650.4
NC_014829:259707:280208280208280738531Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-0650.4