Pre_GI: BLASTP Hits

Some Help

Query: NC_010741:949732:967759 Treponema pallidum subsp. pallidum SS14, complete genome

Start: 967759, End: 968859, Length: 1101

Host Lineage: Treponema pallidum; Treponema; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: Treponema pallidum subsp. pallidum SS14 was isolated in 1977 from a patient with secondary syphilis. This strain is less susceptible than the Nichols strain for a number of antibiotics. This organisms is divided into subspecies each of which causes a specific disease. This organism is the causative agent of endemic and venereal syphilis. This sexual transmitted disease was first discovered in Europe at the end of the fifteenth century, however, the causative agent was not identified until 1905. At one time syphilis was the third most commonly reported communicable disease in the USA. Syphilis is characterized by multiple clinical stages and long periods of latent, asymptomatic infection. Although effective therapies have been available since the introduction of penicillin, syphilis remains a global health problem.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021508:949769:9677969677969688961101Treponema pallidum subsp. pallidum SS14, complete genometRNA-pseudouridine synthase I0691
NC_016844:950231:9682589682589693581101Treponema pallidum subsp. pallidum DAL-1 chromosome, completetRNA-pseudouridine synthase I0691
NC_000919:948287:9663149663149674141101Treponema pallidum subsp. pallidum str. Nichols, complete genometRNA pseudouridine 55 synthase (truB)0691
NC_017268:949543:9675709675709686551086Treponema pallidum subsp. pallidum str. Chicago chromosome,tRNA pseudouridine synthase B0682
NC_011244:863306:871525871525872370846Borrelia recurrentis A1, complete genometRNA pseudouridine 55 synthase3e-40166
NC_007798:80500:812668126681973708Neorickettsia sennetsu str. Miyayama, complete genometRNA pseudouridine synthase B2e-32140
NC_006832:587162:592225592225593115891Ehrlichia ruminantium str. Welgevonden, complete genometRNA pseudouridine synthase B8e-30131
NC_006831:583094:588161588161589051891Ehrlichia ruminantium str. Gardel, complete genometRNA pseudouridine synthase B8e-30131
NC_005295:607319:612383612383613273891Ehrlichia ruminantium str. Welgevonden, complete genomeputative tRNA pseudouridine synthase B8e-30131
NC_013315:1370000:138218913821891383094906Clostridium difficile CD196 chromosome, complete genometRNA pseudouridine synthase B8e-30131
NC_017179:1378875:139196313919631392868906Clostridium difficile BI1, complete genometRNA pseudouridine synthase B8e-30131
NC_011728:832073:843503843503844351849Borrelia burgdorferi ZS7, complete genometRNA pseudouridine synthase B7e-30131
NC_007799:727798:738289738289739179891Ehrlichia chaffeensis str. Arkansas, complete genometRNA pseudouridine synthase B2e-29130
NC_011898:513835:528246528246529175930Clostridium cellulolyticum H10, complete genometRNA pseudouridine synthase B4e-29129
NC_010516:2511035:253450025345002535369870Clostridium botulinum B1 str. Okra, complete genometRNA pseudouridine synthase B7e-29128
NC_004129:957890:976448976448977365918Pseudomonas fluorescens Pf-5, complete genometRNA pseudouridine synthase B2e-28127
NC_009495:2524000:254627725462772547146870Clostridium botulinum A str. ATCC 3502 chromosome, complete genometRNA pseudouridine synthase B1e-28127
NC_009697:2394826:241830024183002419169870Clostridium botulinum A str. ATCC 19397 chromosome, completetRNA pseudouridine synthase B1e-28127
NC_009698:2367171:239064523906452391514870Clostridium botulinum A str. Hall chromosome, complete genometRNA pseudouridine synthase B1e-28127
NC_014328:1405484:141581414158141416695882Clostridium ljungdahlii ATCC 49587 chromosome, complete genometRNA pseudouridine synthase B1e-28127
NC_012658:2584355:260447326044732605342870Clostridium botulinum Ba4 str. 657 chromosome, complete genometRNA pseudouridine synthase B1e-28127
NC_010520:2585014:260903126090312609900870Clostridium botulinum A3 str. Loch Maree, complete genometRNA pseudouridine synthase B9e-29127
NC_008262:1835613:184906718490671849951885Clostridium perfringens SM101, complete genometRNA pseudouridine synthase b9e-28124
NC_010001:3369500:337468933746893375612924Clostridium phytofermentans ISDg, complete genometRNA pseudouridine synthase B1e-27124
NC_008319:1950889:196486919648691965762894Synechococcus sp. CC9311, complete genometRNA pseudouridine synthase B4e-27122
NC_013947:5431741:543295454329545433886933Stackebrandtia nassauensis DSM 44728 chromosome, complete genometRNA pseudouridine synthase B7e-27121
NC_014387:1175927:119095711909571191916960Butyrivibrio proteoclasticus B316 chromosome 1, complete genometRNA pseudouridine synthase B TruB8e-27121
NC_007516:1947214:195213219521321953079948Synechococcus sp. CC9605, complete genometRNA pseudouridine synthase B1e-26121
NC_008261:2157713:217501921750192175903885Clostridium perfringens ATCC 13124, complete genometRNA pseudouridine synthase B2e-26120
NC_015380:303215:308106308106308984879Candidatus Pelagibacter sp. IMCC9063 chromosome, complete genometRNA pseudouridine synthase B2e-26120
NC_012560:4311906:431791043179104318827918Azotobacter vinelandii DJ, complete genometRNA pseudouridine synthase B2e-26119
NC_021150:4311902:431790643179064318823918Azotobacter vinelandii CA6, complete genometRNA pseudouridine synthase B2e-26119
NC_007907:2879568:288056928805692881471903Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-26118
NC_011830:3904034:390785639078563908740885Desulfitobacterium hafniense DCB-2, complete genometRNA pseudouridine synthase B8e-26118
NC_014218:696409:700292700292701272981Arcanobacterium haemolyticum DSM 20595 chromosome, complete genometRNA pseudouridine synthase B8e-26118
NC_013216:3376186:338441933844193385348930Desulfotomaculum acetoxidans DSM 771, complete genometRNA pseudouridine synthase B9e-26117
NC_014376:3214222:321907932190793219984906Clostridium saccharolyticum WM1 chromosome, complete genometRNA pseudouridine synthase B2e-25116
NC_008343:2589680:261120226112022612131930Granulibacter bethesdensis CGDNIH1, complete genometRNA pseudouridine synthase B2e-25116
NC_019970:1343670:134923713492371350106870Thermoanaerobacterium thermosaccharolyticum M0795, complete genometRNA pseudouridine 55 synthase4e-25115
NC_016627:2799453:281416628141662815053888Clostridium clariflavum DSM 19732 chromosome, complete genometRNA pseudouridine synthase B5e-25115
NC_009483:2201986:220774022077402208672933Geobacter uraniireducens Rf4 chromosome, complete genometRNA pseudouridine synthase B6e-25115
NC_020134:1173000:118373611837361184647912Clostridium stercorarium subsp. stercorarium DSM 8532, completetRNA pseudouridine synthase B7e-25115
NC_013894:1380564:140195314019531402822870Thermocrinis albus DSM 14484 chromosome, complete genometRNA pseudouridine synthase B7e-25115
NC_016632:74569:834458344584407963Serratia symbiotica str. 'Cinara cedri' chromosome, completetRNA pseudouridine 55 synthetase1e-24114
NC_014098:1553900:155488215548821555784903Bacillus tusciae DSM 2912 chromosome, complete genometRNA pseudouridine synthase B2e-24113
NC_011296:530408:542536542536543444909Thermodesulfovibrio yellowstonii DSM 11347, complete genometRNA pseudouridine synthase B3e-24113
NC_013016:1257942:126517412651741266094921Neisseria meningitidis alpha14 chromosome, complete genometRNA pseudouridine synthase B5e-24112
NC_017505:1338661:134525313452531346203951Neisseria meningitidis alpha710 chromosome, complete genometRNA pseudouridine synthase B5e-24112
NC_017353:1699652:170510917051091706026918Staphylococcus lugdunensis N920143, complete genomeputative tRNA pseudouridine synthase B4e-24112
NC_015318:706374:719620719620720471852Hippea maritima DSM 10411 chromosome, complete genometRNA pseudouridine synthase B4e-24112
NS_000191:344000:357533357533358225693Uncultured Termite group 1 bacterium phylotype Rs-D17, completetRNA pseudouridine synthase B4e-24112
NC_020419:344000:357533357533358225693Uncultured Termite group 1 bacterium phylotype Rs-D17 DNA, completetRNA pseudouridine synthase B4e-24112
NC_015589:1899329:192128319212831922218936Desulfotomaculum ruminis DSM 2154 chromosome, complete genometRNA pseudouridine synthase B4e-24112
NC_017516:917817:931945931945932868924Neisseria meningitidis H44/76 chromosome, complete genometRNA pseudouridine synthase B3e-24112
NC_003116:1488576:149313714931371494057921Neisseria meningitidis Z2491, complete genometRNA pseudouridine synthase B1e-23111
NC_017512:1264542:126910312691031270023921Neisseria meningitidis WUE 2594, complete genometRNA pseudouridine synthase B (tRNA pseudouridine 55 synthase; Psi55 synthase; tRNA-uridine isomerase; tRNA pseudouridylate synthase)1e-23111
NC_011528:535680:552066552066552995930Coxiella burnetii CbuK_Q154, complete genometRNA pseudouridine synthase B1e-23111
NC_012121:897866:915858915858916772915Staphylococcus carnosus subsp. carnosus TM300, complete genomeputative tRNA pseudouridine synthase B8e-24111
NC_011527:525759:545429545429546358930Coxiella burnetii CbuG_Q212, complete genometRNA pseudouridine synthase B2e-23110
NC_014330:2520906:252726625272662528126861Brachyspira pilosicoli 95/1000 chromosome, complete genomepseudouridylate synthase2e-23110
NC_002971:1379567:138092113809211381850930Coxiella burnetii RSA 493, complete genometRNA pseudouridine synthase B2e-23110
NC_017517:1377617:138285713828571383777921Neisseria meningitidis M01-240355 chromosome, complete genometRNA pseudouridine synthase B2e-23110
NC_019908:700000:712564712564713424861Brachyspira pilosicoli P43/6/78 chromosome, complete genomepseudouridylate synthase2e-23110
NC_015186:597695:602530602530603465936Acidiphilium multivorum AIU301, complete genometRNA pseudouridine synthase B2e-23110
NC_009484:489398:493583493583494518936Acidiphilium cryptum JF-5 chromosome, complete genometRNA pseudouridine synthase B2e-23110
NC_014103:3985897:399405039940503994967918Bacillus megaterium DSM319 chromosome, complete genometRNA pseudouridine synthase B1e-23110
NC_010729:619664:619664619664620440777Porphyromonas gingivalis ATCC 33277, complete genomeputative tRNA pseudouridine synthase B1e-23110
NC_018607:1251357:125894612589461259806861Brachyspira pilosicoli B2904 chromosome, complete genomepseudouridylate synthase4e-23109
NC_014152:1430156:144627914462791447211933Thermincola sp. JR, complete genometRNA pseudouridine synthase B4e-23109
NC_018604:1489567:149666514966651497525861Brachyspira pilosicoli WesB complete genomepseudouridylate synthase3e-23109
NC_010117:1461502:146150214615021462431930Coxiella burnetii RSA 331, complete genometRNA pseudouridine synthase B3e-23109
NC_014933:979063:100122810012281001935708Bacteroides helcogenes P 36-108 chromosome, complete genometRNA pseudouridine synthase B9e-23108
NC_002528:404545:414247414247415185939Buchnera aphidicola str. APS (Acyrthosiphon pisum), completetRNA pseudouridine 55 synthase2e-22107
NC_000918:465627:481480481480482343864Aquifex aeolicus VF5, complete genometRNA pseudouridine 55 synthase2e-22107
NC_004545:392685:395408395408396316909Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genometRNA pseudouridine synthase B2e-22107
NC_015672:1566565:157461415746141575513900Flexistipes sinusarabici DSM 4947 chromosome, complete genometRNA pseudouridine synthase B1e-22107
NC_011999:936500:946464946464947360897Macrococcus caseolyticus JCSC5402, complete genometRNA pseudouridine 5S synthase homolog1e-22107
NC_020075:114790:128626128626129408783Candidatus Blochmannia chromaiodes str. 640, complete genometRNA pseudouridine synthase B2e-22106
NC_011035:1033942:103917710391771040097921Neisseria gonorrhoeae NCCP11945 chromosome, complete genometRNA pseudouridine synthase B3e-22106
NC_017511:950411:955007955007955927921Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genometRNA pseudouridine synthase B3e-22106
NC_002946:618439:632563632563633483921Neisseria gonorrhoeae FA 1090, complete genomeputative tRNA pseudouridine synthase B3e-22106
NC_014657:944000:959752959752960624873Caldicellulosiruptor owensensis OL chromosome, complete genometRNA pseudouridine synthase b5e-22105
NC_016599:2119631:213962621396262140342717Owenweeksia hongkongensis DSM 17368 chromosome, complete genometRNA pseudouridine 55 synthase2e-21103
NC_009465:29735:586685866859576909Candidatus Vesicomyosocius okutanii HA, complete genometRNA pseudouridine synthase B2e-21103
NC_013943:1381000:139291113929111393804894Denitrovibrio acetiphilus DSM 12809 chromosome, complete genometRNA pseudouridine synthase B6e-21102
NC_020291:1464500:147394214739421474817876Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometRNA pseudouridine synthase B6e-21102
NC_012440:585568:587544587544588425882Persephonella marina EX-H1, complete genometRNA pseudouridine synthase B5e-21102
NC_009674:2551759:255783225578322558755924Bacillus cytotoxicus NVH 391-98 chromosome, complete genometRNA pseudouridine synthase B3e-21102
NC_004461:921364:952187952187953104918Staphylococcus epidermidis ATCC 12228, complete genometRNA pseudouridine 5S synthase3e-21102
NC_014727:1292213:130981813098181310714897Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,tRNA pseudouridine synthase b3e-21102
NC_005823:3280000:328882432888243289675852Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130tRNA pseudouridine synthase B8e-21101
NC_007622:1214629:122880712288071229724918Staphylococcus aureus RF122, complete genometRNA-pseudouridine 5S synthase8e-21101
NC_009782:1327340:134151613415161342433918Staphylococcus aureus subsp. aureus Mu3, complete genometRNA pseudouridine 5S synthase1e-20101
NC_012659:3617000:362316936231693624092924Bacillus anthracis str. A0248, complete genometRNA pseudouridine synthase B2e-20100
NC_005945:3615623:362383736238373624760924Bacillus anthracis str. Sterne, complete genometRNA pseudouridine synthase B2e-20100
NC_008054:1117703:113224411322441133140897Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completePseudouridylate synthase2e-20100
NC_007530:3616828:362326936232693624192924Bacillus anthracis str. 'Ames Ancestor', complete genome2e-20100
NC_010184:3675424:368189036818903682813924Bacillus weihenstephanensis KBAB4, complete genometRNA pseudouridine synthase B2e-20100
NC_004342:929033:940128940128940979852Leptospira interrogans serovar Lai str. 56601 chromosome I,tRNA pseudouridine synthase B2e-20100
NC_011725:3821789:382785538278553828778924Bacillus cereus B4264 chromosome, complete genometRNA pseudouridine synthase B2e-20100
NC_017338:1234077:124594512459451246862918Staphylococcus aureus subsp. aureus JKD6159 chromosome, completeputative tRNA pseudouridine synthase B2e-20100
NC_004459:1679335:168255316825531683497945Vibrio vulnificus CMCP6 chromosome I, complete sequencetRNA pseudouridine synthase B1e-20100
NC_005139:2731623:274478927447892745733945Vibrio vulnificus YJ016 chromosome I, complete sequencetRNA pseudouridine synthase B1e-20100
NC_014965:670115:674845674845675789945Vibrio vulnificus MO6-24/O chromosome I, complete sequencetRNA pseudouridine synthase B/tRNA Psi551e-20100
NC_005061:96536:116087116087116854768Candidatus Blochmannia floridanus, complete genometRNA pseudouridine 5S synthase2e-20100
NC_017259:388000:396914396914397852939Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,tRNA pseudouridine 55 synthase2e-20100
NC_002952:1291444:130562213056221306539918Staphylococcus aureus subsp. aureus MRSA252, complete genomeputative tRNA pseudouridine synthase B3e-2099.8
NC_014335:3567931:357399435739943574917924Bacillus cereus biovar anthracis str. CI chromosome, completetRNA pseudouridine synthase B3e-2099.8
NC_005957:3638750:364481336448133645736924Bacillus thuringiensis serovar konkukian str. 97-27, completetRNA pseudouridine synthase B3e-2099.8
NC_012472:3661912:366797536679753668898924Bacillus cereus 03BB102, complete genometRNA pseudouridine synthase B3e-2099.8
NC_008600:3643905:364996836499683650891924Bacillus thuringiensis str. Al Hakam, complete genometRNA pseudouridine synthase B3e-2099.8
NC_016779:3579743:358580635858063586729924Bacillus cereus F837/76 chromosome, complete genometRNA pseudouridine synthase B3e-2099.8
NC_011773:3651963:365802636580263658949924Bacillus cereus AH820 chromosome, complete genometRNA pseudouridine synthase B3e-2099.8
NC_006274:3697255:370369637036963704619924Bacillus cereus E33L, complete genometRNA pseudouridine synthase B3e-2099.8
NC_017341:1291583:130575913057591306676918Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,putative tRNA pseudouridine synthase B3e-2099.8
NC_014909:86000:120743120743121501759Candidatus Blochmannia vafer str. BVAF chromosome, complete genometRNA pseudouridine synthase B3e-2099.8
NC_003909:3587695:359587335958733596796924Bacillus cereus ATCC 10987, complete genometRNA pseudouridine synthase B4e-2099.4
NC_009253:2139379:214464121446412145573933Desulfotomaculum reducens MI-1 chromosome, complete genometRNA pseudouridine synthase B4e-2099.4
NC_017200:3655496:366487236648723665795924Bacillus thuringiensis serovar finitimus YBT-020 chromosome,tRNA pseudouridine synthase B5e-2099
NC_014171:3701051:370711537071153708038924Bacillus thuringiensis BMB171 chromosome, complete genometRNA pseudouridine synthase B5e-2099
NC_017208:3816753:382320538232053824128924Bacillus thuringiensis serovar chinensis CT-43 chromosome, completetRNA pseudouridine synthase B5e-2099
NC_008529:1133665:115156811515681152464897Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completePseudouridine synthase6e-2098.6
NC_011772:3787500:379357137935713794494924Bacillus cereus G9842, complete genometRNA pseudouridine synthase B6e-2098.6
NC_011969:3549000:355514835551483556071924Bacillus cereus Q1 chromosome, complete genometRNA pseudouridine synthase b7e-2098.6
NC_012880:3915500:391605739160573917013957Dickeya dadantii Ech703, complete genometRNA pseudouridine synthase B8e-2098.2
NC_021175:751616:759075759075759953879Streptococcus oligofermentans AS 1.3089, complete genometRNA pseudouridine synthase B9e-2098.2
NC_011658:3603009:361118636111863612109924Bacillus cereus AH187 chromosome, complete genometRNA pseudouridine synthase B1e-1997.8
NC_013939:1535071:154306215430621543958897Deferribacter desulfuricans SSM1, complete genometRNA pseudouridine synthase B1e-1997.8
NC_007645:1245927:125471412547141255649936Hahella chejuensis KCTC 2396, complete genometRNA pseudouridine synthase B2e-1997.1
NC_013517:2437574:245682624568262457668843Sebaldella termitidis ATCC 33386, complete genometRNA pseudouridine synthase B2e-1996.7
NC_004432:1225077:124554412455441246242699Mycoplasma penetrans HF-2, complete genometRNA pseudouridine 5S synthase5e-1995.9
NC_006369:3058000:306608530660853066996912Legionella pneumophila str. Lens, complete genometRNA pseudouridine synthase B7e-1995.1
NC_013730:933089:955288955288956013726Spirosoma linguale DSM 74, complete genometRNA pseudouridine synthase B1e-1894
NC_016893:563890:578710578710579636927Wigglesworthia glossinidia endosymbiont of Glossina morsitanstRNA U55 pseudouridine synthase7e-1891.7
NC_009613:2697913:270049127004912701195705Flavobacterium psychrophilum JIP02/86, complete genometRNA pseudouridine synthase B5e-1789
NC_004722:3777907:378397037839703784818849Bacillus cereus ATCC 14579, complete genometRNA pseudouridine synthase B1e-1687.4
NC_011653:1339868:134693013469301347850921Thermosipho africanus TCF52B, complete genometRNA pseudouridine synthase B2e-1687
NC_016771:3555506:356368335636833564531849Bacillus cereus NC7401, complete genometRNA pseudouridine synthase B4e-1686.3
NC_014758:1349494:135490313549031355808906Calditerrivibrio nitroreducens DSM 19672 chromosome, completetRNA pseudouridine synthase b1e-1584.7
NC_004344:257471:263762263762264745984Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis,hypothetical protein1e-1378.2
NC_013861:311908:331682331682332590909Legionella longbeachae NSW150, complete genometRNA pseudouridine synthase B4e-1376.3
NC_011295:847903:847043847043847915873Coprothermobacter proteolyticus DSM 5265, complete genometRNA pseudouridine synthase B5e-1272.4
NC_014507:374359:396499396499397416918Methanoplanus petrolearius DSM 11571 chromosome, complete genomepseudouridylate synthase TruB domain-containing protein2e-1067
NC_009635:1283830:129106212910621292057996Methanococcus aeolicus Nankai-3 chromosome, complete genomeH/ACA RNA-protein complex component Cbf5p6e-1065.5
NC_003364:484293:4993814993815003821002Pyrobaculum aerophilum str. IM2, complete genometRNA pseudouridine synthase B2e-0757.4
NC_010482:1540011:155507515550751556052978Candidatus Korarchaeum cryptofilum OPF8, complete genomePseudouridylate synthase5e-0755.8
NC_019942:987134:100907710090771009931855Aciduliprofundum sp. MAR08-339, complete genome7e-0755.1