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Query: NC_010729:1818500:1822068 Porphyromonas gingivalis ATCC 33277, complete genome

Start: 1822068, End: 1823141, Length: 1074

Host Lineage: Porphyromonas gingivalis; Porphyromonas; Porphyromonadaceae; Bacteroidales; Bacteroidetes; Bacteria

General Information: This strain was isolated from human gingiva. This organism is associated with severe and chronic periodontal (tissues surrounding and supporting the tooth) diseases. Progression of the disease is caused by colonization by this organism in an anaerobic environment in host tissues and severe progression results in loss of the tissues supporting the tooth and eventually loss of the tooth itself. The black pigmentation characteristic of this bacterium comes from iron acquisition that does not use the typical siderophore system of other bacteria but accumulates hemin. Peptides appear to be the predominant carbon and energy source of this organism, perhaps in keeping with its ability to destroy host tissue. Oxygen tolerance systems play a part in establishment of the organism in the oral cavity, including a superoxide dismutase. Pathogenic factors include extracellular adhesins that mediate interactions with other bacteria as well as the extracellular matrix, and a host of degradative enzymes that are responsible for tissue degradation and spread of the organism including the gingipains, which are trypsin-like cysteine proteases.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_002950:353549:367963367963368871909Porphyromonas gingivalis W83, complete genomehypothetical protein1e-151535
NC_015571:1495286:150725115072511508159909Porphyromonas gingivalis TDC60, complete genomehypothetical protein2e-151535
NC_013410:3358008:336252633625263363419894Fibrobacter succinogenes subsp. succinogenes S85 chromosome,hypothetical protein7e-34144
NC_008593:1917118:195568019556801956573894Clostridium novyi NT, complete genomeIntegral membrane protein, putative1e-1791.3
NC_015425:2144639:218068521806852181578894Clostridium botulinum BKT015925 chromosome, complete genomeintegral membrane protein1e-1687.4
NC_021171:4588792:459100545910054591931927Bacillus sp. 1NLA3E, complete genomehypothetical protein3e-1479.7
NC_014150:1006000:101636510163651017222858Brachyspira murdochii DSM 12563 chromosome, complete genomeprotein of unknown function DUF6 transmembrane1e-1274.7
NC_012225:1015452:101545210154521016309858Brachyspira hyodysenteriae WA1, complete genomehypothetical protein1e-1274.3
NC_008255:1500067:151718115171811518089909Cytophaga hutchinsonii ATCC 33406, complete genomepermease, DMT superfamily2e-1170.1
NC_014614:2333890:233493423349342335860927Clostridium sticklandii, complete genomeconserved membrane protein of unknown function8e-0961.6
NC_015152:1230995:124803412480341248969936Spirochaeta sp. Buddy chromosome, complete genomehypothetical protein2e-0860.5
NC_013939:1812259:183215018321501833049900Deferribacter desulfuricans SSM1, complete genomedrug/metabolite transporter1e-0757.4
NC_004757:427483:431853431853432797945Nitrosomonas europaea ATCC 19718, complete genomeIntegral membrane protein, DUF62e-0757
NC_014758:245707:246976246976247845870Calditerrivibrio nitroreducens DSM 19672 chromosome, completehypothetical protein9e-0651.6