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Query: NC_010673:291679 Borrelia hermsii DAH, complete genome

Start: 291679, End: 316817, Length: 25139

Host Lineage: Borrelia hermsii; Borrelia; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated from a case of relapsing fever in western Washington, USA. Borrelia hermsii is the causative agent of tick-borne relapsing fever in the western United States and Canada. Borrelia then multiplies rapidly, causing a generalized infection throughout the tick. While feeding, the tick passes the organism into a mammalian host through its infectious saliva. Relapsing fever is characterized by a period of chills, fever, headache, and malaise, an asymptomatic period, followed by another episode of symptoms. This cycle of relapsing is due to changes in the surface proteins of Borrelia, which allow it to avoid detection and removal by the host immune system. This antigenic variation is the result of homologous recombination of silent proteins into an expressed locus, causing partial or complete replacement of one serotype with another. These plasmids carry genes involved in antigenic variation and pathogenicity.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008710:27720727720731812040914Borrelia turicatae 91E135, complete genome09987BLASTN svgBLASTP svg
NC_006156:27141027141029519623787Borrelia garinii PBi chromosome linear, complete sequence01699BLASTN svgBLASTP svg
NC_001318:27048827048829478024293Borrelia burgdorferi B31, complete genome01411BLASTN svgBLASTP svg
NC_015921:27251727251729332520809Borrelia bissettii DN127 chromosome, complete genome01354BLASTN svgBLASTP svg
NC_008277:27274127274129229919559Borrelia afzelii PKo, complete genome01203BLASTN svgBLASTP svg
NC_015722:4539*45393359929061Candidatus Midichloria mitochondrii IricVA chromosome, complete3e-1591.7BLASTN svgBLASTP svg
NC_015276:27690002769000279436025361Marinomonas mediterranea MMB-1 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_007484:32319373231937325059618660Nitrosococcus oceani ATCC 19707, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009850:972692*97269299808925398Arcobacter butzleri RM4018, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014330:841841*84184186434222502Brachyspira pilosicoli 95/1000 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_018607:2184832*2184832220348618655Brachyspira pilosicoli B2904 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_018604:2303239*2303239232188618648Brachyspira pilosicoli WesB complete genome2e-0765.9BLASTN svgBLASTP svg
NC_002942:29432062943206296445521250Legionella pneumophila subsp. pneumophila str. Philadelphia 1,7e-0763.9BLASTN svgBLASTP svg
NC_003454:21134642113464214145027987Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete7e-0763.9BLASTN svgBLASTP svg
NC_006368:30282863028286305492626641Legionella pneumophila str. Paris, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_006369:28887012888701290683418134Legionella pneumophila str. Lens, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014330:2268773*2268773229259923827Brachyspira pilosicoli 95/1000 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_018607:1803500*1803500182666923170Brachyspira pilosicoli B2904 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_019908:982471*982471100686924399Brachyspira pilosicoli P43/6/78 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_011653:1616423*1616423164434727925Thermosipho africanus TCF52B, complete genome3e-0661.9BLASTN svgBLASTP svg