Pre_GI: BLASTP Hits

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Query: NC_010673:291679:297500 Borrelia hermsii DAH, complete genome

Start: 297500, End: 297934, Length: 435

Host Lineage: Borrelia hermsii; Borrelia; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated from a case of relapsing fever in western Washington, USA. Borrelia hermsii is the causative agent of tick-borne relapsing fever in the western United States and Canada. Borrelia then multiplies rapidly, causing a generalized infection throughout the tick. While feeding, the tick passes the organism into a mammalian host through its infectious saliva. Relapsing fever is characterized by a period of chills, fever, headache, and malaise, an asymptomatic period, followed by another episode of symptoms. This cycle of relapsing is due to changes in the surface proteins of Borrelia, which allow it to avoid detection and removal by the host immune system. This antigenic variation is the result of homologous recombination of silent proteins into an expressed locus, causing partial or complete replacement of one serotype with another. These plasmids carry genes involved in antigenic variation and pathogenicity.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008710:277207:296791296791297225435Borrelia turicatae 91E135, complete genomebasal-body rod modification protein FlgD2e-71266
NC_006156:271410:293552293552293995444Borrelia garinii PBi chromosome linear, complete sequenceflagellar hook assembly protein4e-53206
NC_017238:272980:293892293892294335444Borrelia afzelii PKo chromosome, complete genomeflagellar hook assembly scaffolding protein3e-51199
NC_011728:269853:294153294153294596444Borrelia burgdorferi ZS7, complete genomeflagellar basal body rod modification protein7e-50195
NC_000919:773784:793408793408793869462Treponema pallidum subsp. pallidum str. Nichols, complete genomeflagellar hook assembly protein5e-23106
NC_016843:775371:795179795179795640462Treponema pallidum subsp. pertenue str. Gauthier chromosome,flagellar basal body rod modification protein FlgD5e-23106
NC_016844:775334:795346795346795807462Treponema pallidum subsp. pallidum DAL-1 chromosome, completeflagellar basal body rod modification protein FlgD5e-23106
NC_016848:775822:795446795446795907462Treponema pallidum subsp. pertenue str. CDC2 chromosome, completeflagellar basal body rod modification protein FlgD5e-23106
NC_017268:775000:794658794658795119462Treponema pallidum subsp. pallidum str. Chicago chromosome,flagellar hook capping protein5e-23106
NC_021508:775264:794888794888795349462Treponema pallidum subsp. pallidum SS14, complete genomeflagellar basal body rod modification protein FlgD5e-23106
NC_015714:768500:788290788290788751462Treponema paraluiscuniculi Cuniculi A chromosome, complete genomeflagellar basal body rod modification protein FlgD4e-23106
NC_020134:586840:5998545998546008671014Clostridium stercorarium subsp. stercorarium DSM 8532, completeflagellar hook capping protein FlgD7e-1889.4
NC_019978:625476:638719638719639129411Halobacteroides halobius DSM 5150, complete genomeflagellar hook capping protein8e-1889
NC_009012:574145:587106587106588077972Clostridium thermocellum ATCC 27405, complete genomeflagellar hook capping protein2e-1787.4
NC_011883:1478173:148163614816361482490855Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,flagellar hook capping protein3e-1787
NC_010718:1454087:147045414704541470891438Natranaerobius thermophilus JW/NM-WN-LF, complete genomeflagellar hook capping protein5e-1786.3
NC_014652:628435:643647643647644141495Caldicellulosiruptor hydrothermalis 108 chromosome, completeflagellar hook capping protein1e-1582
NC_014377:1060000:108066710806671081056390Thermosediminibacter oceani DSM 16646 chromosome, complete genomeflagellar hook capping protein8e-1475.9
NC_003210:721824:730074730074730496423Listeria monocytogenes EGD-e, complete genomeflagellar hook assembly protein6e-1475.9
NC_013766:757987:767597767597768019423Listeria monocytogenes 08-5578 chromosome, complete genomeflagellar basal body rod modification protein6e-1475.9
NC_013768:721897:734301734301734723423Listeria monocytogenes 08-5923, complete genomeflagellar basal body rod modification protein6e-1475.9
NC_015172:1075592:108001510800151080806792Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomeflagellar hook capping protein1e-1375.1
NC_011653:1616423:164155916415591642227669Thermosipho africanus TCF52B, complete genomebasal-body rod modification protein FlgD1e-1375.1
NC_002973:730942:744566744566744988423Listeria monocytogenes str. 4b F2365, complete genomeflagellar hook assembly protein2e-1374.7
NC_011660:1889504:191475419147541915176423Listeria monocytogenes HCC23 chromosome, complete genomeflagellar basal body rod modification protein2e-1374.7
NC_012488:732233:738558738558738980423Listeria monocytogenes Clip81459, complete genomeflagellar basal body rod modification protein2e-1374.7
NC_016011:678419:683574683574683996423Listeria ivanovii subsp. ivanovii PAM 55, complete genomeputative flagellar hook assembly protein2e-1374.7
NC_003212:721112:729361729361729783423Listeria innocua Clip11262, complete genomeflagellar hook assembly protein1e-1374.7
NC_009253:2615777:262294326229432623500558Desulfotomaculum reducens MI-1 chromosome, complete genomeflagellar hook capping protein2e-1373.9
NC_013223:685628:700295700295700978684Desulfohalobium retbaense DSM 5692, complete genomeflagellar hook capping protein5e-1373.2
NC_009664:533021:545381545381545908528Kineococcus radiotolerans SRS30216, complete genomeflagellar hook capping protein5e-1373.2
NC_007645:4195500:422568142256814226091411Hahella chejuensis KCTC 2396, complete genomeFlagellar hook capping protein5e-1373.2
NC_016751:1979201:198640119864011987069669Marinitoga piezophila KA3 chromosome, complete genomeflagellar hook capping protein2e-1271.2
NC_016584:4363382:438370943837094384500792Desulfosporosinus orientis DSM 765 chromosome, complete genomeflagellar hook capping protein3e-1270.9
NC_009633:2725128:273142827314282731832405Alkaliphilus metalliredigens QYMF chromosome, complete genomeflagellar hook capping protein4e-1270.1
NC_018664:1663324:167729716772971677779483Clostridium acidurici 9a chromosome, complete genomeflagellar basal body rod modification protein FlgD2e-1167.8
NC_011772:1575674:158030715803071580885579Bacillus cereus G9842, complete genomeflagellar hook assembly protein family protein7e-0959.3
NC_017187:1832045:184196918419691842649681Arcobacter butzleri ED-1, complete genomeflagellar hook assembly protein FlgD1e-0858.5
NC_008593:1103293:111622911162291117053825Clostridium novyi NT, complete genomeflagellar hook assembly protein FlgD3e-0857.4
NC_017297:2854934:285493428549342855755822Clostridium botulinum F str. 230613 chromosome, complete genomeflagellar hook capping protein4e-0857
NC_010520:2860960:286840328684032869200798Clostridium botulinum A3 str. Loch Maree, complete genomeflagellar hook capping protein2e-0754.7
NC_009697:2714668:271996827199682720765798Clostridium botulinum A str. ATCC 19397 chromosome, completeflagellar hook capping protein2e-0754.7
NC_009698:2649453:265689526568952657692798Clostridium botulinum A str. Hall chromosome, complete genomeflagellar hook capping protein2e-0754.7
NC_021182:2883716:290370229037022904220519Clostridium pasteurianum BC1, complete genomeflagellar hook capping protein4e-0753.5
NC_008576:4467745:448271444827144483388675Magnetococcus sp. MC-1, complete genomeflagellar hook capping protein8e-0752.4
NC_014500:3071764:307176430717643072435672Dickeya dadantii 3937 chromosome, complete genomeflagellar basal-body rod modification protein flgD1e-0652
NC_015391:2059191:208224720822472082675429Carnobacterium sp. 17-4 chromosome, complete genomeputative flagellar hook assembly protein2e-0651.2
NC_012880:1765920:180939918093991810076678Dickeya dadantii Ech703, complete genomeflagellar hook capping protein2e-0650.8
NC_016894:2931213:294406829440682944487420Acetobacterium woodii DSM 1030 chromosome, complete genomeflagellar hook protein FlgD3e-0650.4
NC_010674:858397:864844864844865809966Clostridium botulinum B str. Eklund 17B, complete genomeflagellar hook assembly protein FlgD4e-0650.1
NC_010723:833870:843162843162844127966Clostridium botulinum E3 str. Alaska E43, complete genomeflagellar hook assembly protein FlgD4e-0650.1
NC_012962:3030726:303072630307263031424699Photorhabdus asymbiotica, complete genomebasal-body rod modification protein flgd (flagellar protein for th initiation of hook assembly)4e-0650.1
NC_009831:66518:782727827278937666Shewanella sediminis HAW-EB3, complete genomeflagellar hook capping protein5e-0650.1
NC_009617:4911595:4919690491969049207091020Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeflagellar hook capping protein8e-0649.3