Pre_GI: BLASTP Hits

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Query: NC_010660:33109:46946 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 46946, End: 47164, Length: 219

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017319:155958:171862171862172047186Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS2 orf14e-28123
NC_014121:489500:514523514523514918396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein2e-25114
NC_009649:94871:103106103106103501396Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,hypothetical protein4e-25113
NC_009649:94871:948719487195266396Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,hypothetical protein4e-25113
NC_009649:16907:300763007630471396Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,hypothetical protein4e-25113
NC_014121:677799:685988685988686383396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase3e-25113
NC_014121:2090630:209890420989042099299396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein3e-25113
NC_014121:5000069:500077350007735001168396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase3e-25113
NC_014121:1682638:171577017157701716165396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase3e-25113
NC_014121:4299500:431649143164914316886396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase3e-25113
NC_014121:2330451:234332723433272343722396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein3e-25113
NC_014121:3553809:356262935626293563024396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein3e-25113
NC_014107:171170:191189191189191584396Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A,IS2 transposase orfA3e-25113
NC_011083:4547825:460386946038694604237369Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transposase2e-2097.8
NC_008253:3122148:314755331475533147759207Escherichia coli 536, complete genomehypothetical protein5e-1476.3
NC_014839:253961:3026573026573038461190Pantoea sp. At-9b plasmid pPAT9B02, complete sequence2e-1167.8
NC_011601:756885:769506769506769720215Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome1e-0962
NC_004431:4319152:432903443290344329369336Escherichia coli CFT073, complete genomeTransposase insC for insertion element IS2A/D/F/H/I/K2e-0961.6
NC_008563:4707826:471945247194524719787336Escherichia coli APEC O1, complete genometransposase InsC for insertion element IS2A/D/F/H/I/K2e-0961.6
NC_011745:3405520:341400934140093414344336Escherichia coli ED1a chromosome, complete genome2e-0961.6
NC_002695:1571389:158711315871131587274162Escherichia coli O157:H7 str. Sakai, complete genomeputative transposase1e-0961.6
NC_002655:1655944:167108916710891671250162Escherichia coli O157:H7 EDL933, complete genomeputative IS encoded protein1e-0961.6
NC_011353:1513000:152804115280411528202162Escherichia coli O157:H7 str. EC4115 chromosome, complete genome1e-0961.6
NC_010498:1094000:110194511019451102355411Escherichia coli SMS-3-5, complete genomeIS2 transposase orfA2e-0961.2
NC_000913:2975659:299525729952572995667411Escherichia coli K12, complete genomeIS2 insertion element repressor InsA2e-0961.2
NC_007941:11319:405034050340913411Escherichia coli UTI89 plasmid pUTI89, complete sequenceIS2 OrfA2e-0961.2
NC_011750:1849561:186742018674201867830411Escherichia coli IAI39 chromosome, complete genomeinsertion sequence 2 OrfA protein2e-0961.2
AC_000091:3180275:318479831847983185208411Escherichia coli W3110 DNA, complete genomeIS2 insertion element repressor InsA2e-0961.2
AC_000091:4501430:450290745029074503317411Escherichia coli W3110 DNA, complete genomeIS2 insertion element repressor InsA2e-0961.2
NC_004741:2009769:201261820126182013028411Shigella flexneri 2a str. 2457T, complete genomeinsertion sequence 2 OrfA protein2e-0961.2
NC_004741:4160500:416881241688124169222411Shigella flexneri 2a str. 2457T, complete genomeinsertion sequence 2 OrfA protein2e-0961.2
NC_004851:157675:171135171135171545411Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceinsertion sequence 2 OrfA protein2e-0961.2
NC_004337:3590323:391475739147573915167411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein2e-0961.2
NC_004337:2035945:203594520359452036355411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein2e-0961.2
NC_017328:3935185:394041639404163940826411Shigella flexneri 2002017 chromosome, complete genomeIS2 orfA2e-0961.2
NC_000913:3176000:318416431841643184574411Escherichia coli K12, complete genomeIS2 insertion element repressor InsA2e-0961.2
NC_004337:3590323:360478136047813605191411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein2e-0961.2
NC_004337:3590323:381541938154193815829411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein2e-0961.2
NC_004741:3041294:307041130704113070821411Shigella flexneri 2a str. 2457T, complete genomeinsertion sequence 2 OrfA protein2e-0961.2
NC_004337:3049118:307957030795703079980411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein2e-0961.2
NC_010498:1210145:121338512133851213795411Escherichia coli SMS-3-5, complete genomeIS2 transposase orfA2e-0961.2
NC_000913:4494773:449625044962504496660411Escherichia coli K12, complete genomeKpLE2 phage-like element; IS2 insertion element repressor InsA2e-0961.2
NC_004337:2747917:277055127705512770961411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein2e-0961.2
NC_010473:3273882:328190932819093282319411Escherichia coli str. K-12 substr. DH10B, complete genomeIS2 insertion element repressor InsA2e-0961.2
NC_010473:3069529:308912730891273089537411Escherichia coli str. K-12 substr. DH10B, complete genomeIS2 insertion element repressor InsA2e-0961.2
NC_010473:4596500:459805845980584598468411Escherichia coli str. K-12 substr. DH10B, complete genomeKpLE2 phage-like element; IS2 insertion element repressor InsA2e-0961.2
AC_000091:2976293:299589129958912996301411Escherichia coli W3110 DNA, complete genomeIS2 insertion element repressor InsA2e-0961.2
NC_010498:1659328:166385016638501664260411Escherichia coli SMS-3-5, complete genomeIS2 transposase orfA2e-0961.2
NC_004337:3590323:383131238313123831722411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein2e-0961.2
NC_008258:3224721:324594132459413246306366Shigella flexneri 5 str. 8401, complete genomeIS2 ORF12e-0961.2
NC_013364:2672837:269553326955332695898366Escherichia coli O111:H- str. 11128, complete genomeputative IS2 repressor protein InsA2e-0961.2
NC_013361:5319497:532925553292555329620366Escherichia coli O26:H11 str. 11368 chromosome, complete genomeinsertion sequence 2 OrfA protein2e-0961.2
NC_016822:1431200:145416914541691454534366Shigella sonnei 53G, complete genomeIS2 repressor TnpA2e-0961.2
NC_016822:1431200:146961514696151469980366Shigella sonnei 53G, complete genomeIS2 repressor TnpA2e-0961.2
NC_016822:3065426:307123730712373071602366Shigella sonnei 53G, complete genomeIS2 repressor TnpA2e-0961.2
NC_016822:3282654:329986332998633300228366Shigella sonnei 53G, complete genomeIS2 repressor TnpA2e-0961.2
NC_016822:3946500:395422239542223954587366Shigella sonnei 53G, complete genomeIS2 repressor TnpA2e-0961.2
NC_017319:155958:172246172246172611366Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceinsertion element IS2 repressor InsA2e-0961.2
NC_017319:192482:218309218309218674366Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceinsertion element IS2 repressor InsA2e-0961.2
NC_017328:3088907:311932431193243119689366Shigella flexneri 2002017 chromosome, complete genomeIS2 ORF12e-0961.2
NC_011751:3453683:347391534739153474289375Escherichia coli UMN026 chromosome, complete genomeIS2 insertion element repressor InsA; KpLE2 phage-like element2e-0961.2
NC_004431:3409389:345226434522643452638375Escherichia coli CFT073, complete genomeTransposase insC for insertion element IS2A/D/F/H/I/K2e-0961.2
NC_012759:4433500:443503044350304435395366Escherichia coli BW2952 chromosome, complete genomeinsertion sequence 2 OrfA protein2e-0961.2
NC_012759:3063285:307135730713573071722366Escherichia coli BW2952 chromosome, complete genomeinsertion sequence 2 OrfA protein2e-0961.2
NC_012759:2862807:288240528824052882770366Escherichia coli BW2952 chromosome, complete genomeinsertion sequence 2 OrfA protein2e-0961.2
NC_008258:1934479:195505819550581955423366Shigella flexneri 5 str. 8401, complete genomeIS2 ORF12e-0961.2
NC_009788:16360:288402884029205366Escherichia coli E24377A plasmid pETEC_73, complete sequenceIS2, transposase orfA2e-0961.2
NC_007384:3741708:375466937546693755034366Shigella sonnei Ss046, complete genomeIS2 ORF12e-0961.2
NC_007384:3151344:316597131659713166336366Shigella sonnei Ss046, complete genomeIS2 ORF12e-0961.2
AC_000091:1083798:110649611064961106861366Escherichia coli W3110 DNA, complete genomeIS2 element protein2e-0961.2
NC_009790:42112:417894178942154366Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS2, transposase orfA2e-0961.2
NC_007606:1209132:121672712167271217092366Shigella dysenteriae Sd197, complete genomeIS2 ORF12e-0961.2
NC_007384:2933625:293993329399332940298366Shigella sonnei Ss046, complete genomeIS2 ORF12e-0961.2
NC_007384:3741708:376003237600323760397366Shigella sonnei Ss046, complete genomeIS2 ORF12e-0961.2
NC_008258:2542863:255648125564812556846366Shigella flexneri 5 str. 8401, complete genomeIS2 ORF12e-0961.2
NC_007613:4119771:413386541338654134230366Shigella boydii Sb227, complete genomeIS2 ORF12e-0961.2
NC_008258:3550500:356523735652373565602366Shigella flexneri 5 str. 8401, complete genomeIS2 ORF13e-0960.5
NC_007613:1353500:135903313590331359398366Shigella boydii Sb227, complete genomeIS2 ORF13e-0960.5
NC_006625:63342:672026720267567366Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequenceinsertion sequence 2 OrfA protein6e-0959.7
NC_009837:127000:127112127112127522411Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequenceinsertion sequence 2 OrfA protein5e-0959.7
NC_009837:92000:107550107550107960411Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequenceinsertion sequence 2 OrfA protein5e-0959.7
NC_014562:469154:475073475073475705633Pantoea vagans C9-1 chromosome, complete genomeTyrosine recombinase xerD7e-0959.3
NC_003047:3360000:341062234106223411014393Sinorhizobium meliloti 1021, complete genomeTRANSPOSASE FOR INSERTION SEQUENCE ELEMENT ISRM17e-0959.3
NC_010498:3291344:329941632994163299715300Escherichia coli SMS-3-5, complete genome1e-0858.9
CU928159:30700:336913369133933243Escherichia coli str. 55989 plasmid 55989p, complete genomeputative transposase ORF A (fragment), IS21e-0858.5
NC_007973:2150962:216442321644232164824402Ralstonia metallidurans CH34 chromosome 1, complete sequencetransposase IS3/IS9112e-0857.8
NC_007973:2773427:278083427808342781235402Ralstonia metallidurans CH34 chromosome 1, complete sequencetransposase IS3/IS9112e-0857.8
NC_016812:258500:290263290263290697435Sinorhizobium fredii HH103, complete genome6e-0856.2
NC_014307:1131241:114283311428331143228396Ralstonia solanacearum CFBP2957 chromosome, complete genometransposase (orfa protein )8e-0855.8
NC_020209:4943734:496484449648444965236393Pseudomonas poae RE*1-1-14, complete genomeputative transposase2e-0754.7
NC_020209:4943734:496661549666154967007393Pseudomonas poae RE*1-1-14, complete genomeputative transposase2e-0754.7
NC_020209:1949500:196784319678431968235393Pseudomonas poae RE*1-1-14, complete genomeputative transposase2e-0754.7
NC_007794:1504449:152745615274561527806351Novosphingobium aromaticivorans DSM 12444, complete genome3e-0753.9
NC_014311:1545175:155820715582071558596390Ralstonia solanacearum PSI07 chromosome, complete genometransposase (ORFA protein )3e-0753.9
NC_014311:2606434:261257926125792612968390Ralstonia solanacearum PSI07 chromosome, complete genometransposase (ORFA protein )3e-0753.9
NC_014310:279912:286062286062286451390Ralstonia solanacearum PSI07 megaplasmid, complete sequencetransposase3e-0753.9
NC_008253:4817864:482475648247564824935180Escherichia coli 536, complete genomeputative transposase4e-0753.5
NC_003305:1743939:174877717487771749166390Agrobacterium tumefaciens str. C58 chromosome linear, completeIS426 transposase5e-0753.1
NC_016002:1048420:105494610549461055332387Pseudogulbenkiania sp. NH8B, complete genometransposase IS3/IS911 family protein5e-0753.1
NC_014664:1614568:161915916191591619572414Rhodomicrobium vannielii ATCC 17100 chromosome, complete genometransposase IS3/IS911 family protein9e-0752.4
NC_014664:2669562:267158626715862671999414Rhodomicrobium vannielii ATCC 17100 chromosome, complete genometransposase IS3/IS911 family protein9e-0752.4
NC_010508:1980689:199160619916061991971366Burkholderia cenocepacia MC0-3 chromosome 1, complete sequencetransposase IS3/IS911 family protein1e-0652
NC_012721:1986436:199367719936771994042366Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase IS3/IS9111e-0652
NC_015424:2462522:247931924793192479633315Aeromonas veronii B565 chromosome, complete genomeIS2 transposase2e-0651.6
NC_003296:556836:578373578373578741369Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completeISRSO10-TRANSPOSASE ORFA PROTEIN2e-0651.2
NC_012721:1635999:164431916443191644684366Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase3e-0650.8
NC_012724:2547500:257322125732212573586366Burkholderia glumae BGR1 chromosome 1, complete genomeTransposase3e-0650.8
NC_014118:1528851:154024615402461540647402Burkholderia sp. CCGE1002 chromosome chromosome 2, completetransposase IS3/IS911 family protein2e-0650.8
NC_014117:132524:163887163887164288402Burkholderia sp. CCGE1002 chromosome chromosome 1, completetransposase IS3/IS911 family protein2e-0650.8
NC_007651:1620000:164870416487041649069366Burkholderia thailandensis E264 chromosome I, complete sequencetransposase2e-0650.8
NC_007650:84140:105871105871106236366Burkholderia thailandensis E264 chromosome II, complete sequencetransposase2e-0650.8
NC_007651:1726472:173842317384231738788366Burkholderia thailandensis E264 chromosome I, complete sequencetransposase2e-0650.8
NC_007650:420745:440579440579440944366Burkholderia thailandensis E264 chromosome II, complete sequencetransposase2e-0650.8
NC_007651:3064530:315599031559903156355366Burkholderia thailandensis E264 chromosome I, complete sequencetransposase2e-0650.8
NC_003296:673790:707962707962708330369Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completeISRSO10-TRANSPOSASE ORFA PROTEIN3e-0650.4
NC_008740:3520500:352477035247703525147378Marinobacter aquaeolei VT8, complete genometransposase IS3/IS911 family protein4e-0650.4
NC_015136:1101725:112602711260271126422396Burkholderia sp. CCGE1001 chromosome 1, complete sequencetransposase IS3/IS911 family protein4e-0650.1
NC_014311:1635408:165416616541661654531366Ralstonia solanacearum PSI07 chromosome, complete genometransposase5e-0649.7
NC_014311:3076519:310981731098173110182366Ralstonia solanacearum PSI07 chromosome, complete genometransposase5e-0649.7
NC_007651:2166000:217506121750612175462402Burkholderia thailandensis E264 chromosome I, complete sequencetransposase8e-0649.3
NC_010515:2111691:217327521732752173676402Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetransposase IS3/IS911 family protein9e-0648.9
NC_010515:2111691:212698321269832127384402Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetransposase IS3/IS911 family protein9e-0648.9
NC_010515:2691000:270750927075092707910402Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetransposase IS3/IS911 family protein9e-0648.9
NC_008543:127675:147175147175147576402Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetransposase IS3/IS911 family protein9e-0648.9
NC_008061:2106848:212219421221942122595402Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetransposase IS3/IS9119e-0648.9