Pre_GI: BLASTP Hits

Some Help

Query: NC_010660:33109:46386 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 46386, End: 46571, Length: 186

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008258:1934479:195505819550581955423366Shigella flexneri 5 str. 8401, complete genomeIS2 ORF19e-28122
NC_012759:4433500:443503044350304435395366Escherichia coli BW2952 chromosome, complete genomeinsertion sequence 2 OrfA protein9e-28122
NC_013361:5319497:532925553292555329620366Escherichia coli O26:H11 str. 11368 chromosome, complete genomeinsertion sequence 2 OrfA protein9e-28122
NC_016822:1431200:145416914541691454534366Shigella sonnei 53G, complete genomeIS2 repressor TnpA9e-28122
NC_016822:1431200:146961514696151469980366Shigella sonnei 53G, complete genomeIS2 repressor TnpA9e-28122
NC_016822:3065426:307123730712373071602366Shigella sonnei 53G, complete genomeIS2 repressor TnpA9e-28122
NC_016822:3282654:329986332998633300228366Shigella sonnei 53G, complete genomeIS2 repressor TnpA9e-28122
NC_016822:3946500:395422239542223954587366Shigella sonnei 53G, complete genomeIS2 repressor TnpA9e-28122
NC_017319:155958:172246172246172611366Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceinsertion element IS2 repressor InsA9e-28122
NC_017319:192482:218309218309218674366Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceinsertion element IS2 repressor InsA9e-28122
NC_017328:3088907:311932431193243119689366Shigella flexneri 2002017 chromosome, complete genomeIS2 ORF19e-28122
NC_012759:3063285:307135730713573071722366Escherichia coli BW2952 chromosome, complete genomeinsertion sequence 2 OrfA protein9e-28122
NC_012759:2862807:288240528824052882770366Escherichia coli BW2952 chromosome, complete genomeinsertion sequence 2 OrfA protein9e-28122
NC_009788:16360:288402884029205366Escherichia coli E24377A plasmid pETEC_73, complete sequenceIS2, transposase orfA9e-28122
NC_007384:3741708:375466937546693755034366Shigella sonnei Ss046, complete genomeIS2 ORF19e-28122
NC_007384:3151344:316597131659713166336366Shigella sonnei Ss046, complete genomeIS2 ORF19e-28122
AC_000091:1083798:110649611064961106861366Escherichia coli W3110 DNA, complete genomeIS2 element protein9e-28122
NC_009790:42112:417894178942154366Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS2, transposase orfA9e-28122
NC_007606:1209132:121672712167271217092366Shigella dysenteriae Sd197, complete genomeIS2 ORF19e-28122
NC_007384:2933625:293993329399332940298366Shigella sonnei Ss046, complete genomeIS2 ORF19e-28122
NC_007384:3741708:376003237600323760397366Shigella sonnei Ss046, complete genomeIS2 ORF19e-28122
NC_008258:2542863:255648125564812556846366Shigella flexneri 5 str. 8401, complete genomeIS2 ORF19e-28122
NC_007613:4119771:413386541338654134230366Shigella boydii Sb227, complete genomeIS2 ORF19e-28122
NC_010498:1210145:121338512133851213795411Escherichia coli SMS-3-5, complete genomeIS2 transposase orfA8e-28122
NC_000913:4494773:449625044962504496660411Escherichia coli K12, complete genomeKpLE2 phage-like element; IS2 insertion element repressor InsA8e-28122
NC_004337:3049118:307957030795703079980411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein7e-28122
AC_000091:4501430:450290745029074503317411Escherichia coli W3110 DNA, complete genomeIS2 insertion element repressor InsA8e-28122
NC_004741:2009769:201261820126182013028411Shigella flexneri 2a str. 2457T, complete genomeinsertion sequence 2 OrfA protein8e-28122
NC_004741:4160500:416881241688124169222411Shigella flexneri 2a str. 2457T, complete genomeinsertion sequence 2 OrfA protein8e-28122
NC_004851:157675:171135171135171545411Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceinsertion sequence 2 OrfA protein8e-28122
NC_004337:3590323:391475739147573915167411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein8e-28122
NC_004337:2035945:203594520359452036355411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein8e-28122
NC_017328:3935185:394041639404163940826411Shigella flexneri 2002017 chromosome, complete genomeIS2 orfA8e-28122
NC_009837:127000:127112127112127522411Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequenceinsertion sequence 2 OrfA protein8e-28122
NC_009837:92000:107550107550107960411Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequenceinsertion sequence 2 OrfA protein8e-28122
NC_004741:3041294:307041130704113070821411Shigella flexneri 2a str. 2457T, complete genomeinsertion sequence 2 OrfA protein7e-28122
AC_000091:3180275:318479831847983185208411Escherichia coli W3110 DNA, complete genomeIS2 insertion element repressor InsA8e-28122
NC_011750:1849561:186742018674201867830411Escherichia coli IAI39 chromosome, complete genomeinsertion sequence 2 OrfA protein8e-28122
NC_004337:2747917:277055127705512770961411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein8e-28122
NC_010473:3273882:328190932819093282319411Escherichia coli str. K-12 substr. DH10B, complete genomeIS2 insertion element repressor InsA8e-28122
NC_010473:3069529:308912730891273089537411Escherichia coli str. K-12 substr. DH10B, complete genomeIS2 insertion element repressor InsA8e-28122
NC_010473:4596500:459805845980584598468411Escherichia coli str. K-12 substr. DH10B, complete genomeKpLE2 phage-like element; IS2 insertion element repressor InsA8e-28122
AC_000091:2976293:299589129958912996301411Escherichia coli W3110 DNA, complete genomeIS2 insertion element repressor InsA8e-28122
NC_010498:1659328:166385016638501664260411Escherichia coli SMS-3-5, complete genomeIS2 transposase orfA8e-28122
NC_004337:3590323:360478136047813605191411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein8e-28122
NC_000913:3176000:318416431841643184574411Escherichia coli K12, complete genomeIS2 insertion element repressor InsA8e-28122
NC_010498:1094000:110194511019451102355411Escherichia coli SMS-3-5, complete genomeIS2 transposase orfA8e-28122
NC_000913:2975659:299525729952572995667411Escherichia coli K12, complete genomeIS2 insertion element repressor InsA8e-28122
NC_007941:11319:405034050340913411Escherichia coli UTI89 plasmid pUTI89, complete sequenceIS2 OrfA8e-28122
NC_007384:1320287:134114013411401341412273Shigella sonnei Ss046, complete genomeIS2 ORF11e-27121
NC_008258:3224721:324594132459413246306366Shigella flexneri 5 str. 8401, complete genomeIS2 ORF13e-27120
NC_008258:3550500:356523735652373565602366Shigella flexneri 5 str. 8401, complete genomeIS2 ORF13e-27120
NC_016822:1304398:132484513248451325030186Shigella sonnei 53G, complete genomeIS2 repressor TnpA2e-27120
NC_004337:3590323:383131238313123831722411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein2e-27120
NC_004337:3590323:381541938154193815829411Shigella flexneri 2a str. 301, complete genomeinsertion sequence 2 OrfA protein2e-27120
NC_007613:1353500:135903313590331359398366Shigella boydii Sb227, complete genomeIS2 ORF18e-27119
NC_013364:2672837:269553326955332695898366Escherichia coli O111:H- str. 11128, complete genomeputative IS2 repressor protein InsA1e-26118
NC_013364:3701895:375328337532833753528246Escherichia coli O111:H- str. 11128, complete genome1e-26118
NC_006625:63342:672026720267567366Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequenceinsertion sequence 2 OrfA protein1e-25114
NC_015424:2462522:247931924793192479633315Aeromonas veronii B565 chromosome, complete genomeIS2 transposase5e-24109
NC_007651:1620000:164870416487041649069366Burkholderia thailandensis E264 chromosome I, complete sequencetransposase6e-23106
NC_007650:84140:105871105871106236366Burkholderia thailandensis E264 chromosome II, complete sequencetransposase6e-23106
NC_007651:1726472:173842317384231738788366Burkholderia thailandensis E264 chromosome I, complete sequencetransposase6e-23106
NC_007650:420745:440579440579440944366Burkholderia thailandensis E264 chromosome II, complete sequencetransposase6e-23106
NC_007651:3064530:315599031559903156355366Burkholderia thailandensis E264 chromosome I, complete sequencetransposase6e-23106
NC_009649:94871:103106103106103501396Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,hypothetical protein1e-22105
NC_009649:94871:948719487195266396Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,hypothetical protein1e-22105
NC_009649:16907:300763007630471396Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,hypothetical protein1e-22105
NC_014121:677799:685988685988686383396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase1e-22105
NC_014121:2090630:209890420989042099299396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-22105
NC_014121:5000069:500077350007735001168396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase1e-22105
NC_014121:1682638:171577017157701716165396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase1e-22105
NC_014121:4299500:431649143164914316886396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative transposase1e-22105
NC_014121:2330451:234332723433272343722396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-22105
NC_014121:3553809:356262935626293563024396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-22105
NC_014107:171170:191189191189191584396Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A,IS2 transposase orfA1e-22105
NC_012721:1635999:164431916443191644684366Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase1e-21102
NC_012724:2547500:257322125732212573586366Burkholderia glumae BGR1 chromosome 1, complete genomeTransposase1e-21102
NC_014311:1545175:155820715582071558596390Ralstonia solanacearum PSI07 chromosome, complete genometransposase (ORFA protein )8e-22102
NC_014311:2606434:261257926125792612968390Ralstonia solanacearum PSI07 chromosome, complete genometransposase (ORFA protein )8e-22102
NC_014310:279912:286062286062286451390Ralstonia solanacearum PSI07 megaplasmid, complete sequencetransposase7e-22102
NC_014121:489500:514523514523514918396Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein5e-22102
NC_003295:2507850:253131225313122531578267Ralstonia solanacearum GMI1000, complete genomeISRSO10-TRANSPOSASE ORFA PROTEIN1e-21101
NC_003296:556836:578373578373578741369Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completeISRSO10-TRANSPOSASE ORFA PROTEIN1e-21101
NC_014311:1635408:165416616541661654531366Ralstonia solanacearum PSI07 chromosome, complete genometransposase1e-21101
NC_014311:3076519:310981731098173110182366Ralstonia solanacearum PSI07 chromosome, complete genometransposase1e-21101
NC_015381:1318818:133375213337521334147396Burkholderia gladioli BSR3 chromosome 1, complete sequencePutative transposase4e-2199.8
NC_015136:1101725:112602711260271126422396Burkholderia sp. CCGE1001 chromosome 1, complete sequencetransposase IS3/IS911 family protein5e-2199.8
NC_007973:2773427:278083427808342781235402Ralstonia metallidurans CH34 chromosome 1, complete sequencetransposase IS3/IS9111e-2098.6
NC_007973:2150962:216442321644232164824402Ralstonia metallidurans CH34 chromosome 1, complete sequencetransposase IS3/IS9111e-2098.6
NC_011083:4547825:460386946038694604237369Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transposase1e-2098.2
NC_015740:3486226:349575634957563496061306Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase1e-2098.2
NC_015740:110633:118976118976119281306Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase1e-2098.2
NC_014307:1131241:114283311428331143228396Ralstonia solanacearum CFBP2957 chromosome, complete genometransposase (orfa protein )1e-2098.2
NC_020209:1949500:196784319678431968235393Pseudomonas poae RE*1-1-14, complete genomeputative transposase2e-2097.4
NC_016626:1699500:171254517125451712931387Burkholderia sp. YI23 plasmid byi_1p, complete sequencetransposase IS3/IS911 family protein2e-2097.4
NC_020209:4943734:496484449648444965236393Pseudomonas poae RE*1-1-14, complete genomeputative transposase4e-2096.7
NC_020209:4943734:496661549666154967007393Pseudomonas poae RE*1-1-14, complete genomeputative transposase4e-2096.7
NC_003296:673790:707962707962708330369Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completeISRSO10-TRANSPOSASE ORFA PROTEIN6e-2095.9
NC_016002:2037374:206991220699122070217306Pseudogulbenkiania sp. NH8B, complete genometransposase1e-1995.5
NC_010508:1980689:199160619916061991971366Burkholderia cenocepacia MC0-3 chromosome 1, complete sequencetransposase IS3/IS911 family protein3e-1993.6
NC_012721:1986436:199367719936771994042366Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase IS3/IS9113e-1993.6
NC_014722:771483:781559781559781804246Burkholderia rhizoxinica HKI 454, complete genometransposase6e-1992.8
NC_011353:1513000:152783715278371527974138Escherichia coli O157:H7 str. EC4115 chromosome, complete genome8e-1992.4
NC_014117:132524:163887163887164288402Burkholderia sp. CCGE1002 chromosome chromosome 1, completetransposase IS3/IS911 family protein9e-1992
NC_014118:1528851:154024615402461540647402Burkholderia sp. CCGE1002 chromosome chromosome 2, completetransposase IS3/IS911 family protein9e-1992
NC_010515:2691000:270750927075092707910402Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetransposase IS3/IS911 family protein2e-1890.9
NC_010515:2111691:212698321269832127384402Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetransposase IS3/IS911 family protein2e-1890.9
NC_010515:2111691:217327521732752173676402Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetransposase IS3/IS911 family protein2e-1890.9
NC_007651:2166000:217506121750612175462402Burkholderia thailandensis E264 chromosome I, complete sequencetransposase2e-1890.9
NC_016002:1048420:105494610549461055332387Pseudogulbenkiania sp. NH8B, complete genometransposase IS3/IS911 family protein4e-1890.1
NC_014931:1642179:165538916553891655781393Variovorax paradoxus EPS chromosome, complete genometransposase IS3/IS911 family protein5e-1889.7
NC_014931:5573942:558062455806245581016393Variovorax paradoxus EPS chromosome, complete genometransposase IS3/IS911 family protein5e-1889.7
NC_014931:2511423:252114325211432521535393Variovorax paradoxus EPS chromosome, complete genometransposase IS3/IS911 family protein5e-1889.7
NC_007650:832507:839851839851840036186Burkholderia thailandensis E264 chromosome II, complete sequencetransposase5e-1889.7
NC_013446:4511602:452805045280504528328279Comamonas testosteroni CNB-2, complete genomehypothetical protein9e-1889
NC_013446:4281250:428656042865604286946387Comamonas testosteroni CNB-2, complete genometransposase IS3/IS9118e-1889
NC_013446:2655955:266894526689452669331387Comamonas testosteroni CNB-2, complete genomeisrso10-transposase orfa protein8e-1889
NC_013446:2820000:284321228432122843598387Comamonas testosteroni CNB-2, complete genometransposase IS3/IS9118e-1889
NC_008543:127675:147175147175147576402Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetransposase IS3/IS911 family protein2e-1787.8
NC_008061:2106848:212219421221942122595402Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetransposase IS3/IS9112e-1787.8
NC_015138:4205986:422258542225854222971387Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completetransposase IS3/IS911 family protein6e-1785.9
NC_010515:1205258:120952112095211209778258Burkholderia cenocepacia MC0-3 chromosome 2, complete sequencetransposase IS3/IS911 family protein3e-1477
NC_016612:2009927:201710720171072017253147Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein1e-1272
NC_010498:3291344:329941632994163299715300Escherichia coli SMS-3-5, complete genome6e-1269.3
NC_014931:4985500:4989767498976749910501284Variovorax paradoxus EPS chromosome, complete genometransposase IS3/IS911 family protein2e-1167.4
NC_014931:4210029:421789242178924218239348Variovorax paradoxus EPS chromosome, complete genome6e-1166.2
NC_014931:4210029:421321742132174213483267Variovorax paradoxus EPS chromosome, complete genome9e-1165.5
NC_007434:2386036:240400224040022404466465Burkholderia pseudomallei 1710b chromosome I, complete sequencetransposase1e-1065.1
NC_006350:1938631:198010519801051980470366Burkholderia pseudomallei K96243 chromosome 1, complete sequencetransposase2e-1064.7
NC_008740:3520500:352477035247703525147378Marinobacter aquaeolei VT8, complete genometransposase IS3/IS911 family protein2e-1064.3
NC_004431:3409389:345226434522643452638375Escherichia coli CFT073, complete genomeTransposase insC for insertion element IS2A/D/F/H/I/K5e-0959.7
NC_011751:3453683:347391534739153474289375Escherichia coli UMN026 chromosome, complete genomeIS2 insertion element repressor InsA; KpLE2 phage-like element5e-0959.7
NC_015593:1587684:159437815943781594785408Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completetransposase IS3/IS911 family protein8e-0959.3
NC_003047:3360000:341062234106223411014393Sinorhizobium meliloti 1021, complete genomeTRANSPOSASE FOR INSERTION SEQUENCE ELEMENT ISRM11e-0858.9
NC_002937:2263763:227883222788322279230399Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeISDvu2, transposase OrfA1e-0858.5
NC_002937:2068117:211144021114402111838399Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeISDvu2, transposase OrfA1e-0858.5
NC_016812:258500:290263290263290697435Sinorhizobium fredii HH103, complete genome5e-0856.6
NC_011002:703194:71245571245571255399Burkholderia cenocepacia J2315 chromosome 3, complete sequence6e-0856.2
NC_007951:769500:789737789737790144408Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase3e-0754.3
NC_011745:3405520:341400934140093414344336Escherichia coli ED1a chromosome, complete genome3e-0753.9
NC_008563:4707826:471945247194524719787336Escherichia coli APEC O1, complete genometransposase InsC for insertion element IS2A/D/F/H/I/K3e-0753.9
NC_004431:4319152:432903443290344329369336Escherichia coli CFT073, complete genomeTransposase insC for insertion element IS2A/D/F/H/I/K3e-0753.9
NC_003305:1743939:174877717487771749166390Agrobacterium tumefaciens str. C58 chromosome linear, completeIS426 transposase1e-0652
NC_003063:304962:325733325733325981249Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein1e-0651.6