Pre_GI: BLASTP Hits

Some Help

Query: NC_010660:33109:40565 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 40565, End: 40849, Length: 285

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:3780000:379030337903033790590288Salmonella enterica subsp. enterica serovar Choleraesuis strputative cytoplasmic protein2e-40164
NC_014107:171170:198644198644198910267Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A,hypothetical protein3e-38157
NC_015761:1488807:150493215049321505210279Salmonella bongori NCTC 12419, complete genomehypothetical protein4e-36149
NC_020181:1344259:136039813603981360664267Enterobacter aerogenes EA1509E, complete genomeFIG032766: hypothetical protein4e-34143
NC_014306:3102000:312397531239753124241267Erwinia billingiae Eb661, complete genomeConserved uncharacterized protein3e-32136
NC_014500:443874:464035464035464307273Dickeya dadantii 3937 chromosome, complete genomeputative cytoplasmic protein1e-2098.6
NC_021066:1393750:140395214039521404230279Raoultella ornithinolytica B6, complete genomehypothetical protein3e-1684
NC_006625:144929:160927160927161205279Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequencehypothetical protein4e-1683.6
NC_007607:87000:113078113078113368291Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequencehypothetical protein1e-1582
NC_010660:175200:204009204009204311303Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequencehypothetical protein9e-1682
NC_007608:97092:120130120130120432303Shigella boydii Sb227 plasmid pSB4_227, complete sequencehypothetical protein9e-1682
NC_014365:2888897:289193228919322892216285Desulfarculus baarsii DSM 2075 chromosome, complete genomeProtein of unknown function DUF17784e-1580.1
NC_010725:1419272:146705814670581467396339Methylobacterium populi BJ001, complete genomeProtein of unknown function DUF17782e-1374.7
NC_015942:2060349:206248120624812062753273Acidithiobacillus ferrivorans SS3 chromosome, complete genomehypothetical protein2e-1374.3
NC_010998:111052:130559130559130816258Rhizobium etli CIAT 652 plasmid pA, complete sequencehypothetical protein3e-1270.5
NC_016147:1672482:168687416868741687119246Pseudoxanthomonas spadix BD-a59 chromosome, complete genomehypothetical protein1e-1168.9
NC_010170:1324758:137052213705221370800279Bordetella petrii, complete genomehypothetical protein1e-1065.5
NC_012721:1686450:169357516935751693856282Burkholderia glumae BGR1 chromosome 2, complete genomehypothetical protein2e-1064.7
NC_015186:491930:496572496572496886315Acidiphilium multivorum AIU301, complete genomehypothetical protein3e-0857
NC_014365:2843126:284945028494502849734285Desulfarculus baarsii DSM 2075 chromosome, complete genomeProtein of unknown function DUF17786e-0856.2
NC_014365:2843126:284852028485202848798279Desulfarculus baarsii DSM 2075 chromosome, complete genomeProtein of unknown function DUF17788e-0855.8
NC_007645:5724000:574579557457955746073279Hahella chejuensis KCTC 2396, complete genomehypothetical protein1e-0755.1
NC_014365:2888897:288967728896772889955279Desulfarculus baarsii DSM 2075 chromosome, complete genomeProtein of unknown function DUF17781e-0755.1
NC_014366:2826575:283594628359462836224279Gamma proteobacterium HdN1, complete genomehypothetical protein2e-0754.3
NC_010688:1192410:124273212427321243022291Xanthomonas campestris pv. campestris, complete genomeputative DNA-binding protein3e-0753.9
NC_007086:1224867:126814712681471268437291Xanthomonas campestris pv. campestris str. 8004, complete genomehypothetical protein3e-0753.9
NC_003902:3666544:367842936784293678719291Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein3e-0753.9
NC_009720:900884:913634913634913933300Xanthobacter autotrophicus Py2, complete genomehypothetical protein5e-0753.1
NC_017271:3641705:365594136559413656231291Xanthomonas campestris pv. raphani 756C chromosome, completehypothetical protein6e-0752.8
NC_011901:2202690:220636622063662206644279Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completehypothetical protein6e-0752.8
NC_009668:445134:464488464488464787300Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequencehypothetical protein7e-0752.8
NC_014228:4408500:442126144212614421539279Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein1e-0652
NC_014638:183115:225478225478225765288Bifidobacterium bifidum PRL2010 chromosome, complete genomehypothetical protein2e-0651.2
NC_014500:564864:581656581656581949294Dickeya dadantii 3937 chromosome, complete genomeputative helix-turn-helix protein, copG family2e-0650.8
NC_012912:4012112:402458740245874024880294Dickeya zeae Ech1591, complete genomeProtein of unknown function DUF17785e-0650.1
NC_016832:4368948:437890743789074379200294Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein6e-0649.7
NC_004631:4381724:439168343916834391976294Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein6e-0649.7
NC_003198:4397074:440703344070334407326294Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein6e-0649.7
NC_016845:4539381:456140045614004561693294Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative CopG family helix-turn-helix protein6e-0649.3
NC_014500:564864:587253587253587546294Dickeya dadantii 3937 chromosome, complete genomeputative helix-turn-helix protein, copG family7e-0649.3
NC_012880:3982383:400087640008764001169294Dickeya dadantii Ech703, complete genomeProtein of unknown function DUF17781e-0548.9