Pre_GI: BLASTP Hits

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Query: NC_010660:33109:37662 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 37662, End: 38081, Length: 420

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011745:4862218:486790848679084868333426Escherichia coli ED1a chromosome, complete genomeputative transposase8e-68254
NC_011751:3453683:350329135032913503716426Escherichia coli UMN026 chromosome, complete genomeputative transposase1e-67254
CP002797:4603787:462158746215874622012426Escherichia coli NA114, complete genomeIS-66 transposase2e-61234
CU928145:4792703:479270347927034793128426Escherichia coli 55989 chromosome, complete genomeputative transposase OrfA from plasmid origin1e-60231
NC_011748:4792703:479270347927034793128426Escherichia coli 55989, complete genomeputative transposase OrfA from plasmid origin1e-60231
AP010958:5090696:509396850939685094393426Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein5e-60229
AP010958:3627355:365264736526473653072426Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein5e-60229
NC_013353:3627355:365264736526473653072426Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein5e-60229
NC_013353:5090696:509396850939685094393426Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein5e-60229
NC_013941:3676146:370144037014403701865426Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransposase-like protein5e-60229
NC_011601:3338888:336418933641893364614426Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase Orf1 of IS6822e-59227
NC_007946:4779745:481483048148304815192363Escherichia coli UTI89, complete genomehypothetical protein2e-58224
CP002797:4775780:479493447949344795296363Escherichia coli NA114, complete genomePutative transposase6e-58222
NC_004431:3409389:348025334802533480615363Escherichia coli CFT073, complete genomeUnknown in ISEc86e-58222
NC_008253:334467:341569341569341931363Escherichia coli 536, complete genomeputative IS orf2e-52203
NC_008253:334467:350210350210350572363Escherichia coli 536, complete genomeputative IS orf2e-49194
CU928159:30700:331343313433571438Escherichia coli str. 55989 plasmid 55989p, complete genomeconserved hypothetical protein, putative transposase IS3 family8e-37152
NC_011751:3453683:347806134780613478498438Escherichia coli UMN026 chromosome, complete genomeputative transposase8e-37152
NC_004431:3409389:345496234549623455399438Escherichia coli CFT073, complete genomeUnknown in putative ISEc88e-37152
NC_014029:331919:392963392963393319357Yersinia pestis Z176003 chromosome, complete genomehypothetical protein3e-35146
CU928159:30700:417434174341979237Escherichia coli str. 55989 plasmid 55989p, complete genomeconserved hypothetical protein5e-23106
CP002797:4603787:461780846178084618044237Escherichia coli NA114, complete genomePutative transposase1e-22105
NC_002695:3852233:387278238727823872940159Escherichia coli O157:H7 str. Sakai, complete genome5e-1889.7
NC_011353:3956630:397586439758643976022159Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeIS66 family transposase OrfA5e-1889.7
NC_004431:3409389:341047334104733410877405Escherichia coli CFT073, complete genomeUnknown protein encoded by ISEc8 within prophage6e-1889.4
NC_007941:11319:331303313033534405Escherichia coli UTI89 plasmid pUTI89, complete sequencehypothetical protein6e-1889.4
NC_016845:2274500:229580922958092296213405Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein2e-1787.4
NC_004337:3590323:385190438519043852578675Shigella flexneri 2a str. 301, complete genomeISSfl4 ORF11e-1582
NC_004851:157675:173438173438174112675Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceISSfl4 ORF11e-1582
NC_017319:155958:173413173413174042630Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceISSfl4 ORF11e-1582
NC_004741:366822:385926385926386423498Shigella flexneri 2a str. 2457T, complete genomeISSfl3 orfA4e-1580.1
NC_008258:401786:423776423776424450675Shigella flexneri 5 str. 8401, complete genomeISSfl4 ORF15e-1579.7
NC_008258:2045000:205991720599172060591675Shigella flexneri 5 str. 8401, complete genomeISSfl4 ORF15e-1579.7
NC_004337:367687:386125386125386799675Shigella flexneri 2a str. 301, complete genomeISSfl4 ORF15e-1579.7
NC_017319:155958:169634169634170308675Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceISSfl4 ORF15e-1579.7
NC_017328:385552:403989403989404663675Shigella flexneri 2002017 chromosome, complete genomeISSfl4 ORF15e-1579.7
AP010958:3627355:362961136296113630285675Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein4e-1579.7
AP010958:5090696:511675551167555117429675Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein4e-1579.7
NC_011601:3338888:334114433411443341818675Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase Orf1 of IS6834e-1579.7
NC_013353:3627355:362961136296113630285675Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein4e-1579.7
NC_013353:5090696:511675551167555117429675Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein4e-1579.7
NC_013008:3911356:391361239136123914286675Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein6e-1579.3
NC_011353:3956630:395888639588863959560675Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeISSfl4 ORF16e-1579.3
NC_002695:3852233:385448938544893855163675Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein6e-1579.3
NC_002655:3919545:392180139218013922475675Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by ISEc86e-1579.3
NC_013941:3676146:367840236784023679076675Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeISSfl3 OrfA3e-1477.4
NC_004851:157675:169705169705170379675Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceISSfl4 ORF14e-1477
NC_013361:3867558:389845438984543898939486Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein1e-1272
NC_009801:1756610:175854817585481759012465Escherichia coli E24377A, complete genomeIS66 family element, orf11e-1272
NC_013716:2476334:248499424849942485671678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-1271.6
NC_013716:3708415:372254337225433723220678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-1271.6
NC_013716:1138441:114611011461101146787678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-1271.6
NC_013716:4824541:483553548355354836212678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-1271.6
NC_013716:2764550:279093027909302791607678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-1271.6
NC_013716:4306695:431035743103574311034678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-1271.6
NC_013716:3327881:335750833575083358185678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-1271.6
NC_013716:2764550:279183027918302792507678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A1e-1271.6
NC_013361:3313284:331480333148033315450648Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein1e-1271.6
NC_009790:42112:442404424044917678Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS66 family element, orf11e-1271.6
NC_009801:3374501:338814533881453388822678Escherichia coli E24377A, complete genomeIS66 family element, orf11e-1271.6
NC_002655:2264773:227763922776392278040402Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded in ISEc83e-1270.5
NC_009788:16360:182921829218681390Escherichia coli E24377A plasmid pETEC_73, complete sequenceIS66 family element, orf13e-1270.5
NC_009801:2898426:294035029403502940739390Escherichia coli E24377A, complete genomeIS66 family element, orf13e-1270.5
NC_009801:1756610:176096717609671761356390Escherichia coli E24377A, complete genomeIS66 family element, orf13e-1270.5
NC_009801:1392696:140961714096171410006390Escherichia coli E24377A, complete genomeIS66 family element, orf13e-1270.5
NC_009790:42112:671896718967578390Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS66 family element3e-1270.5
NC_004431:3409389:342716934271693427570402Escherichia coli CFT073, complete genomeUnknown protein encoded by ISEc8 within prophage3e-1270.5
NC_002695:4584177:458605945860594586460402Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-1270.5
NC_013361:1284579:130444313044431304844402Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein3e-1270.5
NC_013353:3853082:387813638781363878537402Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein3e-1270.5
NC_013008:1307392:132773213277321328133402Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein3e-1270.5
NC_011745:333061:335652335652336053402Escherichia coli ED1a chromosome, complete genomeputative transposase, IS3 family3e-1270.5
NC_002655:4653160:465504246550424655443402Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by ISEc8 within prophage CP-933L3e-1270.5
AP010958:3853082:387813638781363878537402Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein3e-1270.5
NC_007607:87000:116076116076116663588Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceISSfl4 ORF14e-1270.1
NC_013716:5201097:526588652658865266536651Citrobacter rodentium ICC168, complete genomeIS679 transposase A4e-1270.1
NC_010660:33109:446374463745026390Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS66 family element, orf14e-1270.1
NC_010660:86445:950599505995448390Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS66 family element, orf14e-1270.1
NC_002695:3468873:348280134828013483181381Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-1270.1
NC_002695:1794635:180913718091371809517381Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-1270.1
NC_013008:4643825:464522546452254645605381Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase, ISEc83e-1270.1
NC_002695:1364833:138386013838601384261402Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein6e-1269.3
NC_013008:1715831:172970317297031730104402Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase6e-1269.3
NC_013008:3525428:354178635417863542187402Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein6e-1269.3
NC_016822:2940000:295990729599072960308402Shigella sonnei 53G, complete genomehypothetical protein6e-1166.2
NC_009524:1796000:180997918099791810386408Psychrobacter sp. PRwf-1 chromosome, complete genometransposase IS3/IS911 family protein1e-1065.1
NC_014839:68308:881018810188736636Pantoea sp. At-9b plasmid pPAT9B02, complete sequencetransposase IS3/IS911 family protein6e-1062.8
NC_007607:87000:901639016390831669Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceputative transposase2e-0961.2
NC_004578:6334735:635962463596246359956333Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein3e-0960.5
NC_007385:157516:161897161897162565669Shigella sonnei Ss046 plasmid pSS_046, complete sequenceputative transposase4e-0960.1
NC_007908:1252189:125737812573781257782405Rhodoferax ferrireducens T118, complete genometransposase IS3/IS9111e-0858.2
NC_007908:3363902:338422333842233384627405Rhodoferax ferrireducens T118, complete genometransposase IS3/IS9111e-0858.2
NC_020209:1949500:196102319610231961355333Pseudomonas poae RE*1-1-14, complete genomehypothetical protein2e-0857.8
NC_015379:908904:964303964303964644342Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transposase, IS66 family2e-0857.8
NC_015379:2575000:259716425971642597505342Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transposase, IS66 family2e-0857.8
NC_014228:2270000:229328422932842293916633Xenorhabdus nematophila ATCC 19061, complete genomeputative transposase3e-0857.4
NC_007651:3064530:314390831439083144315408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein6e-0856.2
NC_007651:1620000:162740116274011627808408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein6e-0856.2
NC_007651:3560652:358535335853533585760408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein6e-0856.2
NC_007651:1620000:164485016448501645257408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein6e-0856.2
NC_007651:3064530:307232730723273072734408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein6e-0856.2
NC_007651:72952:833758337583782408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein6e-0856.2
NC_007651:1620000:163739216373921637799408Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein6e-0856.2
NC_015379:4630367:464368946436894644021333Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative transposase, IS66 family6e-0856.2
NC_016830:3869572:392236539223653922730366Pseudomonas fluorescens F113 chromosome, complete genometransposase is3 is911 family protein6e-0856.2
NC_014539:888562:893145893145893561417Burkholderia sp. CCGE1003 chromosome 1, complete sequencetransposase IS3/IS911 family protein5e-0856.2
NC_016830:2642881:264842826484282648760333Pseudomonas fluorescens F113 chromosome, complete genometransposase is3 is911 family protein7e-0855.8
NC_016830:5994494:601302060130206013352333Pseudomonas fluorescens F113 chromosome, complete genometransposase is3 is911 family protein7e-0855.8
NC_016830:952342:964653964653964985333Pseudomonas fluorescens F113 chromosome, complete genometransposase is3 is911 family protein7e-0855.8
NC_007510:1959883:200343920034392003855417Burkholderia sp. 383 chromosome 1, complete sequencetransposase IS3/IS9112e-0754.7
NC_012791:721813:725621725621726007387Variovorax paradoxus S110 chromosome 1, complete genometransposase IS3/IS911 family protein2e-0754.3
NC_010943:9294:267652676527052288Stenotrophomonas maltophilia K279a, complete genomeputative ISXac3 related insertion element3e-0753.5
NC_010943:2499092:250846425084642508751288Stenotrophomonas maltophilia K279a, complete genomeputative ISXac3 like transposase3e-0753.5
NC_014910:1591003:159744815974481597876429Alicycliphilus denitrificans BC chromosome, complete genometransposase is3/is911 family protein4e-0753.1
NC_015422:2858228:291509529150952915523429Alicycliphilus denitrificans K601 chromosome, complete genometransposase IS3/IS911 family protein4e-0753.1
NC_014910:1912552:192794719279471928375429Alicycliphilus denitrificans BC chromosome, complete genometransposase is3/is911 family protein4e-0753.1
NC_015422:3184823:319825931982593198687429Alicycliphilus denitrificans K601 chromosome, complete genometransposase IS3/IS911 family protein4e-0753.1
NC_009254:74000:939439394394362420Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase IS3/IS911 family protein8e-0752.4
NC_014307:1131241:114283311428331143228396Ralstonia solanacearum CFBP2957 chromosome, complete genometransposase (orfa protein )8e-0752.4
NC_011001:302500:303100303100303495396Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative transposase1e-0652
NC_011000:1262324:128276612827661283161396Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative transposase1e-0652
NC_011662:2320100:232528823252882325566279Thauera sp. MZ1T, complete genome1e-0652
NC_009254:637952:644979644979645398420Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase IS3/IS911 family protein1e-0652
NC_010676:2869936:287185728718572872336480Burkholderia phytofirmans PsJN chromosome 2, complete sequencetransposase IS3/IS911 family protein2e-0651.6
NC_004578:4869673:488083348808334881072240Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein2e-0651.6
NC_008463:5246954:530117353011735301439267Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative transposase1e-0651.6
NC_007651:1620000:164870416487041649069366Burkholderia thailandensis E264 chromosome I, complete sequencetransposase2e-0651.2
NC_007650:84140:105871105871106236366Burkholderia thailandensis E264 chromosome II, complete sequencetransposase2e-0651.2
NC_007651:1726472:173842317384231738788366Burkholderia thailandensis E264 chromosome I, complete sequencetransposase2e-0651.2
NC_007650:420745:440579440579440944366Burkholderia thailandensis E264 chromosome II, complete sequencetransposase2e-0651.2
NC_007651:3064530:315599031559903156355366Burkholderia thailandensis E264 chromosome I, complete sequencetransposase2e-0651.2
NC_008782:2568027:261179026117902612242453Acidovorax sp. JS42, complete genometransposase IS3/IS911 family protein2e-0651.2
NC_013860:171235:184935184935185363429Azospirillum sp. B510 plasmid pAB510f, complete sequencetransposase2e-0651.2
NC_011002:703194:719199719199719606408Burkholderia cenocepacia J2315 chromosome 3, complete sequenceputative transposase3e-0650.8
NC_013856:692000:697285697285697677393Azospirillum sp. B510 plasmid pAB510b, complete sequencetransposase3e-0650.8
NC_013857:478000:483261483261483653393Azospirillum sp. B510 plasmid pAB510c, complete sequencetransposase3e-0650.8
NC_013854:513196:530041530041530433393Azospirillum sp. B510, complete genometransposase3e-0650.8
NC_012721:1635999:164431916443191644684366Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase2e-0650.8
NC_012724:2547500:257322125732212573586366Burkholderia glumae BGR1 chromosome 1, complete genomeTransposase2e-0650.8
NC_010623:1961685:199889019988901999408519Burkholderia phymatum STM815 chromosome 2, complete sequencetransposase IS3/IS911 family protein3e-0650.4
NC_015572:1252000:125556412555641255971408Methylomonas methanica MC09 chromosome, complete genometransposase IS3/IS911 family protein4e-0650.4
NC_016588:133943:143939143939144331393Azospirillum lipoferum 4B plasmid AZO_p6, complete sequenceputative transposase, IS66 family5e-0650.1
NC_009078:2718741:275026927502692750664396Burkholderia pseudomallei 1106a chromosome II, complete sequenceTransposase4e-0650.1
NC_003296:556836:578373578373578741369Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completeISRSO10-TRANSPOSASE ORFA PROTEIN4e-0650.1
NC_020209:397376:429924429924430241318Pseudomonas poae RE*1-1-14, complete genomeISPpu14, transposase Orf16e-0649.7
NC_012724:1308000:131805013180501318526477Burkholderia glumae BGR1 chromosome 1, complete genomeTransposase IS3/IS911 family protein5e-0649.7
NC_012724:2547500:257948725794872579963477Burkholderia glumae BGR1 chromosome 1, complete genomeTransposase IS3/IS911 family protein5e-0649.7
NC_012721:1986436:200209920020992002575477Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase IS3/IS911 family protein5e-0649.7
NC_012721:2556160:257226625722662572742477Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase IS3/IS911 family protein5e-0649.7
NC_016626:1592781:159875015987501599136387Burkholderia sp. YI23 plasmid byi_1p, complete sequenceputative transposase5e-0649.7
NC_014394:2577949:259843525984352598797363Gallionella capsiferriformans ES-2 chromosome, complete genometransposase IS3/IS911 family protein8e-0649.3
NC_016002:1048420:105494610549461055332387Pseudogulbenkiania sp. NH8B, complete genometransposase IS3/IS911 family protein8e-0649.3