Pre_GI: BLASTP Hits

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Query: NC_010660:175200:178407 Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence

Start: 178407, End: 178829, Length: 423

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007608:97092:100298100298100906609Shigella boydii Sb227 plasmid pSB4_227, complete sequenceIS630 ORF3e-79293
NC_004851:191709:195760195760196716957Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS630 ORF1e-77287
NC_017319:192482:195688195688196644957Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS630 ORF1e-77287
NC_007384:2007467:2014725201472520157561032Shigella sonnei Ss046, complete genomeIS630 ORF5e-77285
NC_007384:1737885:1748054174805417490851032Shigella sonnei Ss046, complete genomeIS630 ORF5e-77285
NC_007384:307013:3185883185883196191032Shigella sonnei Ss046, complete genomeIS630 ORF5e-77285
NC_007384:3383983:3383983338398333850141032Shigella sonnei Ss046, complete genomeIS630 ORF5e-77285
NC_016822:1818897:1827376182737618284071032Shigella sonnei 53G, complete genomeIS630 orf5e-77285
NC_016822:3282654:3298701329870132997321032Shigella sonnei 53G, complete genomeIS630 orf5e-77285
NC_016822:3485631:3497894349789434989251032Shigella sonnei 53G, complete genomeIS630 orf5e-77285
NC_007385:157516:1607221607221617531032Shigella sonnei Ss046 plasmid pSS_046, complete sequenceIS630 ORF4e-77285
NC_012214:745302:7522477522477532871041Erwinia pyrifoliae Ep1/96, complete genometransposase5e-75278
NC_012214:537000:5410455410455420851041Erwinia pyrifoliae Ep1/96, complete genometransposase5e-75278
NC_012779:2424967:243273824327382433289552Edwardsiella ictaluri 93-146, complete genomehypothetical protein2e-71266
NC_009438:236424:2372692372692383001032Shewanella putrefaciens CN-32 chromosome, complete genomeIS630 orf2e-71266
NC_009786:43331:592285922860046819Escherichia coli E24377A plasmid pETEC_80, complete sequence9e-67251
NC_012779:2424967:243549724354972436486990Edwardsiella ictaluri 93-146, complete genomehypothetical protein1e-66251
NC_012779:2856051:286125928612592862020762Edwardsiella ictaluri 93-146, complete genomehypothetical protein4e-65246
NC_012779:3570720:357882835788283579379552Edwardsiella ictaluri 93-146, complete genomehypothetical protein2e-64243
NC_013364:3701895:371511737151173715728612Escherichia coli O111:H- str. 11128, complete genome9e-57218
NC_016861:22256:3292232922339591038Salmonella enterica subsp. enterica serovar Typhimurium strputative integrase3e-56216
NC_003277:22257:3292932929339661038Salmonella typhimurium LT2 plasmid pSLT, complete sequenceputative integrase protein3e-56216
NC_009348:2247500:2274776227477622758071032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase6e-55212
NC_009348:1663870:1679917167991716809481032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase7e-55212
NC_009348:2034500:2045224204522420462551032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase1e-54211
NC_009348:2631759:2642233264223326432641032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase1e-54211
NC_009348:1347500:1354117135411713551481032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase1e-54211
NC_009350:6987:96149614106451032Aeromonas salmonicida subsp. salmonicida A449 plasmid 5, completeIS630 family transposase1e-54211
NC_009348:3261500:3270842327084232718731032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase1e-54211
NC_009348:3261500:3268688326868832697191032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase1e-54211
NC_009348:4135002:4157632415763241586631032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase1e-54211
NC_009348:2362163:2381760238176023827911032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase1e-54211
NC_009348:1475955:1480996148099614820271032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase1e-54211
NC_009348:161244:1691281691281701591032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase1e-54211
NC_009348:3819271:3831763383176338327941032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase1e-54211
NC_009348:1968826:1977019197701919780501032Aeromonas salmonicida subsp. salmonicida A449, complete genomeIS630 family transposase9e-54208
NC_016745:1719800:1728949172894917299801032Oceanimonas sp. GK1 chromosome, complete genomeIS630 family transposase3e-50196
NC_016745:2280375:2291970229197022930011032Oceanimonas sp. GK1 chromosome, complete genomeIS630 family transposase3e-50196
CU928159:30700:441384413844542405Escherichia coli str. 55989 plasmid 55989p, complete genomeputative transposase (fragment), IS630 family4e-48189
NC_012691:2050957:2054975205497520559941020Tolumonas auensis DSM 9187, complete genometransposase, putative4e-47186
NC_012691:1144715:1153221115322111542401020Tolumonas auensis DSM 9187, complete genometransposase, putative4e-47186
NC_002695:3852233:386576138657613866549789Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-46184
NC_013941:3676146:368999936899993690463465Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransposase2e-46184
NC_013364:5083949:509798450979845098829846Escherichia coli O111:H- str. 11128, complete genome2e-46184
AP010958:3627355:364082536408253641670846Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-46184
AP010958:5090696:510537051053705106215846Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-46184
NC_002655:3919545:393301739330173933862846Escherichia coli O157:H7 EDL933, complete genomeputative transposase2e-46184
NC_011353:3956630:397010139701013970946846Escherichia coli O157:H7 str. EC4115 chromosome, complete genome2e-46184
NC_013008:3911356:392482739248273925672846Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase2e-46184
NC_013353:3627355:364082536408253641670846Escherichia coli O103:H2 str. 12009, complete genome2e-46184
NC_013353:5090696:510537051053705106215846Escherichia coli O103:H2 str. 12009, complete genome2e-46184
NC_012779:2424967:244876924487692449023255Edwardsiella ictaluri 93-146, complete genomehypothetical protein4e-43172
NC_005126:5188976:5188976518897651899891014Photorhabdus luminescens subsp. laumondii TTO1, complete genomeTransposase, IS630 family4e-39159
NC_012880:3529017:355402135540213554359339Dickeya dadantii Ech703, complete genome3e-37153
NC_009790:42112:634676346763685219Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS630, transposase, truncation4e-34142
NC_011748:3360967:339013033901303390348219Escherichia coli 55989, complete genomeputative transposase (fragment), IS630 family3e-31133
CU928145:3360967:339013033901303390348219Escherichia coli 55989 chromosome, complete genomeputative transposase (fragment), IS630 family3e-31133
NC_020126:6264651:627370062737006274215516Myxococcus stipitatus DSM 14675, complete genomeIS630 family transposase1e-26118
NC_013421:2613137:262804226280422628872831Pectobacterium wasabiae WPP163, complete genome2e-24111
NC_008095:6143738:6152404615240461535011098Myxococcus xanthus DK 1622, complete genometransposase, IS630 family6e-24109
NC_008253:3941938:398899739889973989359363Escherichia coli 536, complete genomehypothetical protein6e-24109
NC_017030:6061070:606861960686196069125507Corallococcus coralloides DSM 2259 chromosome, complete genomeinsertion element IS630 protein3e-23107
NC_016816:2684336:270954227095422710033492Pantoea ananatis LMG 5342, complete genomeIS630 family transposase2e-22104
NC_017030:2299592:230294723029472303492546Corallococcus coralloides DSM 2259 chromosome, complete genometransposase2C IS630 family2e-22104
NC_002655:2264773:227429422742942274476183Escherichia coli O157:H7 EDL933, complete genomeputative transposase (partial)3e-21100
NC_011353:1716037:173429217342921734474183Escherichia coli O157:H7 str. EC4115 chromosome, complete genome3e-21100
NC_013361:1754346:177181817718181772000183Escherichia coli O26:H11 str. 11368 chromosome, complete genome3e-21100
NC_017030:3546837:355555635555563556062507Corallococcus coralloides DSM 2259 chromosome, complete genomeinsertion element IS630 protein1e-2098.6
NC_012779:2127542:213321121332112133357147Edwardsiella ictaluri 93-146, complete genomehypothetical protein6e-2095.9
NC_010634:3155741:316955731695573169739183Yersinia pseudotuberculosis PB1/+, complete genomeIS630 orf2e-1787.4
NC_011748:3360967:338987633898763390076201Escherichia coli 55989, complete genomeputative transposase (fragment), IS630 family3e-1580.1
CU928145:3360967:338987633898763390076201Escherichia coli 55989 chromosome, complete genomeputative transposase (fragment), IS630 family3e-1580.1
NC_012779:2424967:244847224484722448741270Edwardsiella ictaluri 93-146, complete genomehypothetical protein1e-1478.2
NC_019892:429975:4391354391354401781044Singulisphaera acidiphila DSM 18658 chromosome, complete genometransposase7e-1475.9
NC_019892:2684793:2706311270631127073541044Singulisphaera acidiphila DSM 18658 chromosome, complete genometransposase7e-1475.9
NC_019892:2684793:2697235269723526982781044Singulisphaera acidiphila DSM 18658 chromosome, complete genometransposase7e-1475.9
NC_013595:8162181:8179090817909081801241035Streptosporangium roseum DSM 43021, complete genomehypothetical protein9e-1268.9
NC_017059:2957911:298211329821132982604492Rhodospirillum photometricum DSM 122, complete genomehypothetical protein2e-1168.2
NC_017265:2586729:259294325929432593080138Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,transposase5e-1166.2
NC_009381:1682000:168987516898751690012138Yersinia pestis Pestoides F chromosome, complete genometransposase5e-1166.2
NC_008149:2802392:280860628086062808743138Yersinia pestis Nepal516, complete genometransposase5e-1166.2
NC_004088:2966331:297254529725452972682138Yersinia pestis KIM, complete genometransposase5e-1166.2
NC_008150:844727:888817888817888954138Yersinia pestis Antiqua, complete genomeputative transposase5e-1166.2
NC_009255:1890112:1908471190847119095411071Burkholderia vietnamiensis G4 chromosome 2, complete sequenceputative transposase2e-1064.3
NC_004459:3243987:326640032664003266606207Vibrio vulnificus CMCP6 chromosome I, complete sequencePutative transposase4e-1063.5
NC_004459:3243987:326021232602123260418207Vibrio vulnificus CMCP6 chromosome I, complete sequencePutative transposase4e-1063.5
NC_007951:1042291:1047582104758210486521071Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase2e-0961.2
NC_016593:1092812:110684811068481107375528Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeintegrase4e-0960.1
NC_008782:2781229:2781490278149027825691080Acidovorax sp. JS42, complete genomeIntegrase, catalytic region4e-0960.1
NC_008786:2809985:281787428178742818458585Verminephrobacter eiseniae EF01-2, complete genomeputative transposase5e-0959.7
NC_012793:1718000:1732449173244917335161068Geobacillus sp. WCH70, complete genomeIntegrase catalytic region6e-0959.7
NC_011567:139598:160719160719161237519Anoxybacillus flavithermus WK1, complete genomeTransposase1e-0858.9
NC_012791:2386000:2403297240329724043881092Variovorax paradoxus S110 chromosome 1, complete genomeIntegrase catalytic region1e-0858.5
NC_010623:72500:1035361035361046271092Burkholderia phymatum STM815 chromosome 2, complete sequenceISRSO5-transposase protein1e-0858.2
NC_010625:229478:2434062434062444761071Burkholderia phymatum STM815 plasmid pBPHY01, complete sequenceintegrase, catalytic region2e-0858.2
NC_020126:2687627:269638626963862696694309Myxococcus stipitatus DSM 14675, complete genomeIS630 family transposase2e-0857.8
NC_008786:1553833:1563177156317715642321056Verminephrobacter eiseniae EF01-2, complete genomeputative transposase2e-0857.8
NC_003296:556836:562296562296562835540Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completeREMNANT OF ISRSO5-TRANSPOSASE PROTEIN2e-0857.8
NC_020210:1704500:1748735174873517498021068Geobacillus sp. GHH01, complete genometransposase2e-0857.8
NC_015724:129331:1308041308041319071104Cupriavidus necator N-1 plasmid BB2p, complete sequencetransposase3e-0857.4
NC_009342:135500:1679201679201690111092Corynebacterium glutamicum R chromosome, complete genomehypothetical protein3e-0857.4
NC_015422:3513689:3547993354799335491201128Alicycliphilus denitrificans K601 chromosome, complete genomeISRSO5-transposase protein3e-0857.4
NC_014098:2225174:2233762223376222349071146Bacillus tusciae DSM 2912 chromosome, complete genomehypothetical protein2e-0857.4
NC_003295:112778:1279031279031289941092Ralstonia solanacearum GMI1000, complete genomeISRSO5-TRANSPOSASE PROTEIN2e-0857.4
NC_003296:262118:2697812697812708721092Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completeISRSO5-TRANSPOSASE PROTEIN2e-0857.4
NC_003295:112778:1179921179921190831092Ralstonia solanacearum GMI1000, complete genomeISRSO5-TRANSPOSASE PROTEIN2e-0857.4
NC_020210:1275031:130365813036581304146489Geobacillus sp. GHH01, complete genometransposase4e-0856.6
NC_016593:3249767:326731032673103267798489Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completehypothetical protein4e-0856.6
NC_010087:376918:4319304319304330151086Burkholderia multivorans ATCC 17616 chromosome 3, completetransposase4e-0856.6
NC_020210:1275031:1342816134281613438591044Geobacillus sp. GHH01, complete genometransposase4e-0856.6
NC_010801:550270:5557985557985568831086Burkholderia multivorans ATCC 17616 chromosome 3, completeISBmu8 transposase4e-0856.6
NC_010801:481601:4918434918434929281086Burkholderia multivorans ATCC 17616 chromosome 3, completeISBmu8 transposase4e-0856.6
NC_020181:3585898:361262636126263612745120Enterobacter aerogenes EA1509E, complete genomehypothetical protein7e-0855.8
NC_006510:3321426:335195033519503352333384Geobacillus kaustophilus HTA426, complete genometransposase of IS642-like element8e-0855.8
NC_011982:130199:1454811454811465811101Agrobacterium vitis S4 plasmid pTiS4, complete sequencetransposase1e-0755.5
NC_007489:42500:495504955050038489Rhodobacter sphaeroides 2.4.1 plasmid C, complete sequence1e-0755.1
NC_011982:130199:135413135413136204792Agrobacterium vitis S4 plasmid pTiS4, complete sequence2e-0754.7
NC_009620:1307932:1307932130793213090201089Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequenceferuloyl esterase2e-0754.7
NC_008269:577111:5771115771115781931083Rhodococcus sp. RHA1 plasmid pRHL1, complete sequencetransposase2e-0754.3
NC_015572:4063150:4084032408403240850991068Methylomonas methanica MC09 chromosome, complete genomeintegrase catalytic subunit2e-0754.3
NC_011982:130199:1402221402221413211100Agrobacterium vitis S4 plasmid pTiS4, complete sequence2e-0754.3
NC_013194:1631134:1649249164924916503881140Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completehypothetical protein3e-0753.9
NC_006361:3047788:305867530586753059424750Nocardia farcinica IFM 10152, complete genomeputative transposase5e-0753.1
NC_020908:2571943:2589356258935625904231068Octadecabacter arcticus 238, complete genomeputative IS630 family transposase8e-0752.4
NC_017249:18493:221332213323077945Bradyrhizobium japonicum USDA 6, complete genometransposase9e-0752.4
NC_004463:18497:2197221972230811110Bradyrhizobium japonicum USDA 110, complete genomeputative transposase1e-0652
NC_013595:7302888:730714773071477307701555Streptosporangium roseum DSM 43021, complete genomehypothetical protein1e-0652
NC_008786:2850736:285317828531782854035858Verminephrobacter eiseniae EF01-2, complete genomeputative transposase1e-0651.6
NC_020210:2133996:219293021929302193313384Geobacillus sp. GHH01, complete genometransposase2e-0651.2
NC_009921:4035225:4053138405313840542321095Frankia sp. EAN1pec, complete genomeputative transposase2e-0651.2
NC_008554:4586543:4604255460425546053431089Syntrophobacter fumaroxidans MPOB, complete genomeputative transposase2e-0651.2
NC_009142:5425763:5433158543315854342521095Saccharopolyspora erythraea NRRL 2338, complete genomeputative transposase3e-0650.8
NC_009921:8648994:8662007866200786630951089Frankia sp. EAN1pec, complete genomeputative transposase4e-0650.4
NC_009921:3473854:3481826348182634829141089Frankia sp. EAN1pec, complete genomeputative transposase4e-0650.4
NC_013757:3717500:3718592371859237197041113Geodermatophilus obscurus DSM 43160, complete genomeISMsm5, transposase4e-0650.4
NC_009953:3509229:3531373353137335324611089Salinispora arenicola CNS-205 chromosome, complete genomeputative transposase3e-0650.4
NC_009921:3255833:3263570326357032647391170Frankia sp. EAN1pec, complete genomeputative transposase4e-0650.1
NC_015656:105840:1098501098501109381089Frankia symbiont of Datisca glomerata chromosome, complete genomeputative transposase5e-0650.1
NC_015656:1618329:1628835162883516299231089Frankia symbiont of Datisca glomerata chromosome, complete genomeputative transposase5e-0649.7
NC_015656:2484749:2507008250700825080961089Frankia symbiont of Datisca glomerata chromosome, complete genomeputative transposase5e-0649.7
NC_015656:632960:6426266426266437141089Frankia symbiont of Datisca glomerata chromosome, complete genomeputative transposase5e-0649.7
NC_015656:4850833:4854067485406748551551089Frankia symbiont of Datisca glomerata chromosome, complete genomeputative transposase5e-0649.7
NC_013441:5025444:5025444502544450265171074Gordonia bronchialis DSM 43247, complete genomeISRSO5-transposase protein5e-0649.7
NC_015656:1653450:1668188166818816692761089Frankia symbiont of Datisca glomerata chromosome, complete genomeputative transposase5e-0649.7
NC_015656:132633:1537311537311548191089Frankia symbiont of Datisca glomerata chromosome, complete genomeputative transposase5e-0649.7
NC_021177:7815791:782802778280277828764738Streptomyces fulvissimus DSM 40593, complete genomePutative transposase7e-0649.3
NC_019673:8161242:8181272818127281823301059Saccharothrix espanaensis DSM 44229 complete genomeTransposase, IS630 family7e-0649.3
NC_008786:2809985:2814159281415928151901032Verminephrobacter eiseniae EF01-2, complete genomeIntegrase, catalytic region9e-0648.9