Pre_GI: BLASTP Hits

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Query: NC_010658:4494103:4504969 Shigella boydii CDC 3083-94, complete genome

Start: 4504969, End: 4505562, Length: 594

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (strain BS512; serotype 18) was originally isolated from a 12-year-old boy in Arizona, USA by Dr. Nancy Stockbine. It is a member of Group 1 as determined by limited sequence analysis and can invade HeLa cells. Pathogenicity and virulence have been verified during in vitro experimentation, and multiple plasmids are present in this strain. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Shigella spp. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This species is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010410:3719599:374375137437513744401651Acinetobacter baumannii AYE, complete genomeputative regulator (TetR/AcrR family)5e-1994.4
NC_009725:496443:514054514054514629576Bacillus amyloliquefaciens FZB42, complete genomehypothetical protein1e-0859.7
NC_016047:637778:653172653172653747576Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completetranscriptional regulator TetR1e-0756.2
NC_002927:1292573:129502512950251295645621Bordetella bronchiseptica RB50, complete genomeputative TetR-family transcriptional regulator1e-1376.3
NC_002927:4392768:441134744113474411967621Bordetella bronchiseptica RB50, complete genomeputative TetR-family transcriptional regulator3e-1271.6
NC_010551:2537876:255936425593642559978615Burkholderia ambifaria MC40-6 chromosome 1, complete sequencetranscriptional regulator, TetR family1e-1375.9
NC_008060:1945597:196449319644931965116624Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencetranscriptional regulator, TetR family2e-1272.4
NC_008542:2631138:265003426500342650657624Burkholderia cenocepacia HI2424 chromosome 1, complete sequencetranscriptional regulator, TetR family2e-1272.4
NC_010804:2518695:253523025352302535865636Burkholderia multivorans ATCC 17616 chromosome 1, completeTetR family transcriptional regulator1e-1273.2
NC_010084:988908:988908988908989543636Burkholderia multivorans ATCC 17616 chromosome 1, completeTetR family transcriptional regulator1e-1273.2
NC_007510:2805121:281997328199732820587615Burkholderia sp. 383 chromosome 1, complete sequencetranscriptional regulator, TetR family2e-1272
NC_015856:3059737:307258730725873073210624Collimonas fungivorans Ter331 chromosome, complete genomeTetR family transcriptional regulator8e-1270.1
NC_015856:3832000:383402238340223834645624Collimonas fungivorans Ter331 chromosome, complete genomeTetR family transcriptional regulator7e-0650.4
NC_012590:850130:854133854133854525393Corynebacterium aurimucosum ATCC 700975, complete genomehypothetical protein2e-0858.5
NC_010002:4326509:432650943265094327135627Delftia acidovorans SPH-1, complete genometranscriptional regulator, TetR family3e-1375.1
NC_015563:3203012:325163832516383252264627Delftia sp. Cs1-4 chromosome, complete genomeregulatory protein TetR1e-1272.8
NC_016514:2079975:209723320972332097853621Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YcfQ4e-0754.7
NC_020063:3690308:371432137143213714902582Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator2e-0652.4
NC_020063:2077233:208847920884792089114636Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator4e-1787.8
NC_012947:3947238:395611439561143956707594Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeTetR family transcriptional regulator1e-113408
NC_012967:4449576:445740144574014457994594Escherichia coli B str. REL606 chromosome, complete genomeputative transcriptional regulator1e-113408
NC_000913:4462782:447214744721474472740594Escherichia coli K12, complete genomepredicted transcriptional regulator6e-111399
NC_011742:4795733:480355848035584804151594Escherichia coli S88 chromosome, complete genometranscriptional regulator1e-112404
NC_010498:4821519:482934548293454829938594Escherichia coli SMS-3-5, complete genomeTetR family transcriptional regulator2e-111400
NC_010473:4564590:457395545739554574548594Escherichia coli str. K-12 substr. DH10B, complete genomepredicted transcriptional regulator6e-111399
AC_000091:4472000:447880444788044479397594Escherichia coli W3110 DNA, complete genomepredicted transcriptional regulator6e-111399
NC_016631:3245501:325459032545903255171582Granulicella mallensis MP5ACTX8 chromosome, complete genomeregulatory protein TetR3e-1375.1
NC_012731:2302974:232991623299162330545630Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeTetR family transcriptional regulator3e-53207
NC_009648:1487692:151769215176921518285594Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative regulatory protein TetR1e-54212
NC_015559:1478114:149093514909351491531597Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeTetR family transcriptional regulator6e-1167.4
NC_012968:1191037:120075812007581201360603Methylotenera mobilis JLW8, complete genometranscriptional regulator, TetR family2e-1479
NC_020418:3102460:310548531054853106096612Morganella morganii subsp. morganii KT, complete genomeTranscriptional regulator, TetR family5e-1374.3
NC_008705:868623:931779931779932327549Mycobacterium sp. KMS, complete genometranscriptional regulator, TetR family1e-1376.3
NC_008146:861319:923050923050923598549Mycobacterium sp. MCS, complete genometranscriptional regulator, TetR family1e-1376.3
NC_013235:5127148:513109951310995131689591Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, TetR family1e-0652.8
NC_016935:1868839:189862518986251899203579Paenibacillus mucilaginosus 3016 chromosome, complete genomeTetR family transcriptional regulator4e-0754.7
NC_015690:1348691:137475713747571375335579Paenibacillus mucilaginosus KNP414 chromosome, complete genomeTetR family transcriptional regulator8e-0753.5
NC_012914:1923500:193114719311471931740594Paenibacillus sp. JDR-2, complete genometranscriptional regulator, TetR family5e-0857.4
NC_013956:3273340:329451032945103295127618Pantoea ananatis LMG 20103 chromosome, complete genomeYcfQ4e-1167.8
NC_016816:1137904:114302111430211143638618Pantoea ananatis LMG 5342, complete genometranscriptional regulator2e-1065.9
NC_014838:589581:608819608819609418600Pantoea sp. At-9b plasmid pPAT9B01, complete sequencetranscriptional regulator, TetR family2e-0858.5
NC_007948:517893:533902533902534492591Polaromonas sp. JS666, complete genometranscriptional regulator, TetR family2e-0755.8
NC_015379:4249238:427499442749944275626633Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, TetR family2e-50198
NC_007492:3384077:339444033944403395021582Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, TetR family1e-0652.8
NC_021066:3028421:304263130426313043224594Raoultella ornithinolytica B6, complete genomeTetR family transcriptional regulator7e-1167
NC_014659:4908182:491490549149054915444540Rhodococcus equi 103S, complete genomeTetR family transcriptional regulator2e-1375.9
NC_014659:2737843:273784327378432738469627Rhodococcus equi 103S, complete genomeTetR family transcriptional regulator3e-0652
NC_014664:1669642:168504116850411685649609Rhodomicrobium vannielii ATCC 17100 chromosome, complete genomeregulatory protein TetR3e-0651.6
NC_009142:5459819:546278154627815463392612Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator, TetR family6e-1270.5
NC_009142:5519208:552635655263565526955600Saccharopolyspora erythraea NRRL 2338, complete genomeTetR-family transcriptional regulator9e-0960.1
NC_011149:1429523:143521314352131435803591Salmonella enterica subsp. enterica serovar Agona str. SL483,transcriptional regulator, TetR family3e-57221
NC_006905:1766000:178046117804611781051591Salmonella enterica subsp. enterica serovar Choleraesuis strputative bacterial regulatory helix-turn-helix proteins, araC family1e-57222
NC_011080:1750000:176368517636851764275591Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator, TetR family2e-58225
NC_011147:1267005:127269412726941273284591Salmonella enterica subsp. enterica serovar Paratyphi A strtranscriptional regulator7e-59226
NC_006511:1273162:127885112788511279441591Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative transcriptional regulator7e-59226
NC_011094:1726000:174050417405041741094591Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional regulator, TetR family protein2e-58224
NC_003198:1336894:134258513425851343175591Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative transcriptional regulator2e-58224
NC_004631:1623511:163800716380071638597591Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative transcriptional regulator2e-58224
NC_016860:1752000:176502317650231765613591Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator4e-58223
NC_016810:1709695:172418617241861724776591Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator4e-58223
NC_016856:1763640:177731017773101777900591Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative regulatory protein4e-58223
NC_017046:1709578:172406917240691724659591Salmonella enterica subsp. enterica serovar Typhimurium str. 798transcriptional regulator4e-58223
NC_016857:1709695:172418617241861724776591Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative regulatory protein4e-58223
NC_016863:1711832:172550217255021726092591Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative regulatory protein4e-58223
NC_003197:1753663:176733217673321767922591Salmonella typhimurium LT2, complete genomeputative regulatory protein4e-58223
NC_020064:1409596:143973814397381440349612Serratia marcescens FGI94, complete genometranscriptional regulator1e-1169.7
NC_007613:4217557:424768342476834247937255Shigella boydii Sb227, complete genomehypothetical protein2e-43174
NC_013947:373862:390307390307390966660Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, TetR family7e-1167
NC_014623:9492000:949227594922759492889615Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeTetR family transcriptional regulator1e-1376.3
NC_016582:11380000:113875491138754911388190642Streptomyces bingchenggensis BCW-1 chromosome, complete genomeTetR family transcriptional regulator5e-0857.4
NC_016582:11672500:116874191168741911688027609Streptomyces bingchenggensis BCW-1 chromosome, complete genomeTetR family transcriptional regulator2e-1065.9
NC_021177:2241647:224302222430222243660639Streptomyces fulvissimus DSM 40593, complete genomeTetR family transcriptional regulator1e-0963.2
NC_019897:73957:109118109118109699582Thermobacillus composti KWC4 chromosome, complete genometranscriptional regulator4e-1064.7
NC_016628:935420:940067940067940657591Vibrio furnissii NCTC 11218 chromosome 2, complete sequencetranscriptional regulator, TetR family4e-1374.3
NC_004605:1092476:111059311105931111168576Vibrio parahaemolyticus RIMD 2210633 chromosome II, completeputative TetR-family4e-0754.3
NC_009720:3281000:329115032911503291818669Xanthobacter autotrophicus Py2, complete genomeTetR family transcriptional regulator2e-0755.8
NC_016010:1247008:125118812511881251784597Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeTetR family transcriptional regulator8e-52203
NC_003902:1220600:122060012206001221190591Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein8e-54209
NC_015709:1769806:178428217842821784989708Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completeTetR family transcriptional regulator3e-1375.1