Pre_GI: BLASTN Hits

Some Help

Query: NC_010634:4001154 Yersinia pseudotuberculosis PB1/+, complete genome

Start: 4001154, End: 4025484, Length: 24331

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_012912:10536181053618108982736210Dickeya zeae Ech1591, complete genome1e-60242BLASTN svgBLASTP svg
NC_014306:64215264215266635524204Erwinia billingiae Eb661, complete genome1e-1489.7BLASTN svgBLASTP svg
CU928145:2973968*2973968299959925632Escherichia coli 55989 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_011748:2973968*2973968299959925632Escherichia coli 55989, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_010468:1130000*1130000115350023501Escherichia coli ATCC 8739, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_009801:2898426*2898426294876250337Escherichia coli E24377A, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_009800:2788164*2788164280740719244Escherichia coli HS, complete genome8e-1073.8BLASTN svgBLASTP svg
CU928160:2818750*2818750284490226153Escherichia coli IAI1 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_011750:2928990*2928990296940040411Escherichia coli IAI39 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_000913:2746886*2746886280151454629Escherichia coli K12, complete genome8e-1073.8BLASTN svgBLASTP svg
AP010958:3853082*3853082389809945018Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010498:2847359*2847359287165924301Escherichia coli SMS-3-5, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_010473:2839902*2839902288978149880Escherichia coli str. K-12 substr. DH10B, complete genome8e-1073.8BLASTN svgBLASTP svg
AC_000091:2747520*2747520280214854629Escherichia coli W3110 DNA, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_014837:3739408*3739408376471125304Pantoea sp. At-9b chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014562:2871765*2871765290090029136Pantoea vagans C9-1 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_015061:59624759624762407627830Rahnella sp. Y9602 chromosome, complete genome9e-28133BLASTN svgBLASTP svg
NC_007606:4182188*4182188420162219435Shigella dysenteriae Sd197, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_004741:2741971*2741971276422322253Shigella flexneri 2a str. 2457T, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_004337:2747917*2747917277096123045Shigella flexneri 2a str. 301, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_008258:2905413*2905413292427518863Shigella flexneri 5 str. 8401, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_007384:2933625*2933625295770924085Shigella sonnei Ss046, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_007712:43350043350045759924100Sodalis glossinidius str. 'morsitans', complete genome8e-1073.8BLASTN svgBLASTP svg
NC_015224:3892972*3892972393636443393Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-25125BLASTN svgBLASTP svg
NC_010159:18185001818500183609917600Yersinia pestis Angola, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_010159:28784992878499290014121643Yersinia pestis Angola, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010159:12880001288000132559537596Yersinia pestis Angola, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_010159:409500*40950045168242183Yersinia pestis Angola, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010159:22523802252380227191719538Yersinia pestis Angola, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010159:10719371071937109241320477Yersinia pestis Angola, complete genome019420BLASTN svgBLASTP svg
NC_010159:18614651861465188409922635Yersinia pestis Angola, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_008150:24518722451872247509923228Yersinia pestis Antiqua, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008150:43737224373722439711823397Yersinia pestis Antiqua, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_008150:25996612599661262209922439Yersinia pestis Antiqua, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008150:34958513495851351954723697Yersinia pestis Antiqua, complete genome019450BLASTN svgBLASTP svg
NC_008150:1705152*1705152174460539454Yersinia pestis Antiqua, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_008150:28226892822689284340720719Yersinia pestis Antiqua, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_005810:12309761230976125037019395Yersinia pestis biovar Microtus str. 91001, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_005810:32727653272765329109918335Yersinia pestis biovar Microtus str. 91001, complete genome08530BLASTN svgBLASTP svg
NC_005810:26134562613456263609922644Yersinia pestis biovar Microtus str. 91001, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_005810:40453034045303406820222900Yersinia pestis biovar Microtus str. 91001, complete genome9e-25123BLASTN svgBLASTP svg
NC_005810:29053622905362292838523024Yersinia pestis biovar Microtus str. 91001, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_005810:87267287267291210839437Yersinia pestis biovar Microtus str. 91001, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_005810:25496802549680258809938420Yersinia pestis biovar Microtus str. 91001, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_003143:28045002804500282209917600Yersinia pestis CO92, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_003143:31159333115933313845922527Yersinia pestis CO92, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003143:28493772849377287209922723Yersinia pestis CO92, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_003143:33468343346834337009923266Yersinia pestis CO92, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_003143:87536787536791053535169Yersinia pestis CO92, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_003143:67562267562269837822757Yersinia pestis CO92, complete genome016310BLASTN svgBLASTP svg
NC_004088:12657301265730129020024471Yersinia pestis KIM, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004088:18018191801819182425322435Yersinia pestis KIM, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_004088:39238043923804394664622843Yersinia pestis KIM, complete genome019450BLASTN svgBLASTP svg
NC_004088:16229411622941164556522625Yersinia pestis KIM, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_004088:35053833505383354055935177Yersinia pestis KIM, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_004088:1851500*1851500188954638047Yersinia pestis KIM, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_004088:22272782227278224825620979Yersinia pestis KIM, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_004088:11968751196875123427537401Yersinia pestis KIM, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_008149:11956141195614122004824435Yersinia pestis Nepal516, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008149:24111612411161243409922939Yersinia pestis Nepal516, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_008149:15565811556581157548818908Yersinia pestis Nepal516, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_008149:33732293373229340909935871Yersinia pestis Nepal516, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008149:1842500*1842500188064438145Yersinia pestis Nepal516, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_008149:587689*58768961062122933Yersinia pestis Nepal516, complete genome015270BLASTN svgBLASTP svg
NC_006155:30407693040769306409923331Yersinia pseudotuberculosis IP 32953, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_006155:29795002979500301649636997Yersinia pseudotuberculosis IP 32953, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_006155:32127963212796323445221657Yersinia pseudotuberculosis IP 32953, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_006155:11913071191307123066739361Yersinia pseudotuberculosis IP 32953, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_006155:35961203596120363277836659Yersinia pseudotuberculosis IP 32953, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_006155:40620004062000408523223233Yersinia pseudotuberculosis IP 32953, complete genome019350BLASTN svgBLASTP svg
NC_006155:28938022893802291787224071Yersinia pseudotuberculosis IP 32953, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_006155:34564883456488347575719270Yersinia pseudotuberculosis IP 32953, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010634:31291743129174315220423031Yersinia pseudotuberculosis PB1/+, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010634:11754041175404121321037807Yersinia pseudotuberculosis PB1/+, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_010634:35098803509880354653836659Yersinia pseudotuberculosis PB1/+, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010634:3269010*3269010329227823269Yersinia pseudotuberculosis PB1/+, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010634:29600002960000298209922100Yersinia pseudotuberculosis PB1/+, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_010634:28108152810815283272221908Yersinia pseudotuberculosis PB1/+, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_010634:33680003368000339029322294Yersinia pseudotuberculosis PB1/+, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010634:28946312894631293584741217Yersinia pseudotuberculosis PB1/+, complete genome8e-1383.8BLASTN svgBLASTP svg
NC_010465:66020766020767915818952Yersinia pseudotuberculosis YPIII, complete genome010560BLASTN svgBLASTP svg
NC_010465:15506171550617157325522639Yersinia pseudotuberculosis YPIII, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_010465:22828742282874230925826385Yersinia pseudotuberculosis YPIII, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010465:17240001724000174609922100Yersinia pseudotuberculosis YPIII, complete genome5e-1487.7BLASTN svgBLASTP svg