Pre_GI: BLASTP Hits

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Query: NC_010610:755000:763466 Lactobacillus fermentum IFO 3956, complete genome

Start: 763466, End: 763780, Length: 315

Host Lineage: Lactobacillus fermentum; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. This probiotic species has been associated with active caries lesions.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009513:870837:873129873129873464336Lactobacillus reuteri F275, complete genometranscriptional regulator, XRE family2e-22104
NC_010999:1245239:125530312553031255641339Lactobacillus casei, complete genomeRepressor (Gp132 protein)2e-1994
NC_015428:1483768:150354015035401503917378Lactobacillus buchneri NRRL B-30929 chromosome, complete genomehelix-turn-helix domain-containing protein7e-1785.9
NC_013198:1095591:110846011084601108798339Lactobacillus rhamnosus GG, complete genomeprophage protein, DNA-binding protein4e-1579.7
NC_015573:2040500:204189420418942042295402Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein3e-1477.4
NC_010516:2328288:234697823469782347427450Clostridium botulinum B1 str. Okra, complete genometranscriptional regulator2e-1373.9
NC_013205:526281:535213535213535704492Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,transcriptional regulator, XRE family3e-1373.6
NC_012658:1810640:181110518111051811530426Clostridium botulinum Ba4 str. 657 chromosome, complete genomeimmunity repressor protein6e-1372.8
NC_009495:2479465:252016025201602520594435Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeDNA-binding phage protein8e-1372.4
NC_011837:3272752:329170232917023292304603Clostridium kluyveri NBRC 12016, complete genomehypothetical protein1e-1271.6
NC_009706:3341250:336020033602003360802603Clostridium kluyveri DSM 555 chromosome, complete genometranscriptional regulator1e-1271.6
NC_017025:1651870:166594816659481666286339Flavobacterium indicum GPTSA100-9, complete genometranscriptional regulator, XRE family3e-1270.5
NC_014964:2272413:229248922924892292878390Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completehelix-turn-helix domain-containing protein4e-1270.1
NC_014538:2158131:218091821809182181331414Thermoanaerobacter sp. X513 chromosome, complete genomehelix-turn-helix domain-containing protein1e-1168.9
NC_014964:35862:358623586236251390Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completehelix-turn-helix domain-containing protein4e-1166.6
NC_010321:35855:358553585536244390Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeXRE family transcriptional regulator4e-1166.6
NC_006270:1415001:142528614252861425654369Bacillus licheniformis ATCC 14580, complete genomeprobable transcriptional regulator (phage-related)8e-1165.9
NC_006322:1415863:142614914261491426517369Bacillus licheniformis ATCC 14580, complete genomeYqaE8e-1165.9
NC_015519:1081539:108566910856691086064396Tepidanaerobacter sp. Re1 chromosome, complete genomehelix-turn-helix domain-containing protein8e-1165.9
NC_017179:1683199:168775916877591688100342Clostridium difficile BI1, complete genomephage repressor1e-1065.1
NC_016052:842762:846086846086846415330Tetragenococcus halophilus NBRC 12172, complete genomeputative Xre family DNA-binding protein2e-1064.3
NC_014551:576000:577723577723578103381Bacillus amyloliquefaciens DSM 7, complete genomehypothetical protein4e-1063.5
NC_008527:1036757:103945210394521039799348Lactococcus lactis subsp. cremoris SK11, complete genomeTranscriptional regulator, xre family5e-1063.2
NC_014915:3320768:335612833561283356535408Geobacillus sp. Y412MC52 chromosome, complete genomehelix-turn-helix domain protein2e-0961.6
NC_013411:3314799:335015933501593350566408Geobacillus sp. Y412MC61, complete genometranscriptional regulator, XRE family2e-0961.6
NC_014206:3355156:337460433746043375011408Geobacillus sp. C56-T3 chromosome, complete genomeXRE family transcriptional regulator2e-0961.6
NC_015601:627217:628845628845629261417Erysipelothrix rhusiopathiae str. Fujisawa, complete genomeXRE family transcriptional regulator2e-0961.2
NC_012471:2080902:210324921032492103599351Streptococcus equi subsp. equi 4047, complete genomephage DNA-binding protein2e-0961.2
NC_009332:1050353:106756510675651067915351Streptococcus pyogenes str. Manfredo chromosome, complete genomephage DNA-binding protein3e-0960.8
NC_011375:749693:751627751627751977351Streptococcus pyogenes NZ131 chromosome, complete genomerepressor-phage associated3e-0960.8
NC_015690:7422911:743071274307127430906195Paenibacillus mucilaginosus KNP414 chromosome, complete genomeXRE family transcriptional regulator3e-0960.8
NC_016935:7512884:752068375206837520877195Paenibacillus mucilaginosus 3016 chromosome, complete genomeXRE family transcriptional regulator3e-0960.8
NC_017208:1831918:183596118359611836299339Bacillus thuringiensis serovar chinensis CT-43 chromosome, completetranscriptional regulator2e-0960.8
NC_017179:1683199:168719916871991687747549Clostridium difficile BI1, complete genomephage regulatory protein2e-0960.8
NC_009617:1897887:190150219015021901873372Clostridium beijerinckii NCIMB 8052 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0960.8
NC_004722:1804788:180713218071321807470339Bacillus cereus ATCC 14579, complete genomeTranscriptional regulator3e-0960.5
NC_016048:751000:769269769269769643375Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein3e-0960.5
NC_016894:3988180:400563340056334006028396Acetobacterium woodii DSM 1030 chromosome, complete genomeputative phage repressor4e-0960.1
NC_013171:896802:898431898431899051621Anaerococcus prevotii DSM 20548, complete genometranscriptional regulator, XRE family6e-0959.3
NC_021182:2536000:253788925378892538323435Clostridium pasteurianum BC1, complete genomeputative transcriptional regulator1e-0858.9
NC_015958:2174731:218947921894792190027549Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomehelix-turn-helix domain-containing protein9e-0958.9
NC_015660:1076159:108793410879341088275342Geobacillus thermoglucosidasius C56-YS93 chromosome, completehelix-turn-helix domain-containing protein9e-0958.9
NC_015573:2463123:248983824898382490296459Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein8e-0958.9
NC_020210:3246839:326198032619803262387408Geobacillus sp. GHH01, complete genometranscriptional regulator1e-0858.5
NC_009089:1093832:109383210938321094164333Clostridium difficile 630, complete genomeputative phage regulatory protein2e-0858.2
NC_003212:57061:785057850578981477Listeria innocua Clip11262, complete genomehypothetical protein2e-0857.8
NC_016935:1636278:164723516472351647612378Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein2e-0857.8
NC_003212:1248000:124920512492051249633429Listeria innocua Clip11262, complete genomehypothetical protein2e-0857.8
NC_016077:1278104:129394612939461294317372Acidaminococcus intestini RyC-MR95 chromosome, complete genomehypothetical protein2e-0857.8
NC_015975:752927:770469770469770795327Lactobacillus ruminis ATCC 27782 chromosome, complete genometranscriptional regulator, phage associated2e-0857.8
NC_014554:1821320:183409318340931834419327Lactobacillus plantarum subsp. plantarum ST-III chromosome,transcription regulator2e-0857.4
NC_012984:1027898:102789810278981028224327Lactobacillus plantarum JDM1, complete genometranscription regulator2e-0857.4
NC_014614:2643203:265647126564712656779309Clostridium sticklandii, complete genomehypothetical protein3e-0857.4
NC_015573:2463123:248662424866242486842219Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein3e-0857.4
NC_009012:2927793:293408629340862934514429Clostridium thermocellum ATCC 27405, complete genometranscriptional regulator, XRE family4e-0857
NC_013921:1915377:192814219281421928690549Thermoanaerobacter italicus Ab9 chromosome, complete genometranscriptional regulator, XRE family3e-0857
NC_009706:2003194:202021320202132020998786Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein3e-0857
NC_011837:1935294:195171619517161952501786Clostridium kluyveri NBRC 12016, complete genomehypothetical protein3e-0857
NC_015519:1081539:108624910862491086506258Tepidanaerobacter sp. Re1 chromosome, complete genomehelix-turn-helix domain-containing protein3e-0857
NC_009922:1917271:191727119172711917642372Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, XRE family3e-0857
NC_017208:694500:696523696523696867345Bacillus thuringiensis serovar chinensis CT-43 chromosome, completetranscriptional regulator4e-0856.6
NC_014650:603500:617995617995618441447Geobacillus sp. Y4.1MC1 chromosome, complete genomehelix-turn-helix domain-containing protein4e-0856.6
NC_019896:1989997:200906620090662009404339Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completetranscription regulator YobD4e-0856.6
NC_011660:2924397:292631729263172926793477Listeria monocytogenes HCC23 chromosome, complete genomegp335e-0856.6
NC_009706:1935418:195186219518621952668807Clostridium kluyveri DSM 555 chromosome, complete genomephage transcriptional regulator6e-0856.2
NC_017167:2298962:237640023764002376648249Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1XRE family transcriptional regulator6e-0856.2
NC_013798:1778758:179057017905701790932363Streptococcus gallolyticus UCN34, complete genomeputative transcriptional regulator, Cro/CI family6e-0856.2
NC_014657:2127500:214037221403722140905534Caldicellulosiruptor owensensis OL chromosome, complete genomehelix-turn-helix domain protein5e-0856.2
NC_012791:2423466:245831424583142458721408Variovorax paradoxus S110 chromosome 1, complete genometranscriptional regulator, XRE family1e-0755.1
NC_014964:2272413:229208922920892292313225Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completehelix-turn-helix domain-containing protein1e-0755.1
NC_013766:679906:683546683546683872327Listeria monocytogenes 08-5578 chromosome, complete genometranscriptional regulator2e-0754.7
NC_012034:2555447:257988525798852580199315Anaerocellum thermophilum DSM 6725, complete genometranscriptional regulator, XRE family2e-0754.7
NC_010999:561914:563195563195563548354Lactobacillus casei, complete genomeRep protein2e-0754.7
NC_014334:2696000:271134127113412711898558Lactobacillus casei str. Zhang chromosome, complete genomeXRE family transcriptional regulator3e-0754.3
NC_000964:2049899:205548820554882055826339Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein2e-0754.3
NC_004193:205278:227578227578227943366Oceanobacillus iheyensis HTE831, complete genometranscriptional repressor of PBSX genes2e-0754.3
NC_000964:521975:530691530691531074384Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein2e-0754.3
NC_012891:1100726:111421611142161114566351Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1,putative phage DNA-binding protein2e-0754.3
NC_012214:1267589:127161312716131272011399Erwinia pyrifoliae Ep1/96, complete genomePutative phage regulatory protein3e-0753.9
NC_014652:420457:426226426226426582357Caldicellulosiruptor hydrothermalis 108 chromosome, completetranscriptional regulator, xre family5e-0753.1
NC_020995:3300751:330534333053433305561219Enterococcus casseliflavus EC20, complete genomehypothetical protein5e-0753.1
NC_002662:30922:436894368944075387Lactococcus lactis subsp. lactis Il1403, complete genomeprophage ps1 protein 156e-0753.1
NC_010610:269380:2913002913002924121113Lactobacillus fermentum IFO 3956, complete genomehypothetical protein7e-0752.8
NC_017195:2027430:204155520415552041794240Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completehypothetical protein7e-0752.8
NC_007644:280000:287262287262287648387Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, XRE family6e-0752.8
NC_020291:795500:818708818708819061354Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeputative transcriptional regulator9e-0752.4
NC_012912:2174183:219374621937462194132387Dickeya zeae Ech1591, complete genometranscriptional regulator, XRE family1e-0652
NC_014831:8965:177711777118166396Thermaerobacter marianensis DSM 12885 chromosome, complete genomehelix-turn-helix domain protein1e-0652
NC_013132:5942981:596067259606725961016345Chitinophaga pinensis DSM 2588, complete genometranscriptional regulator, XRE family1e-0652
NC_009633:2592000:263151726315172631879363Alkaliphilus metalliredigens QYMF chromosome, complete genomehelix-turn-helix domain-containing protein1e-0652
NC_013132:5942981:595278159527815953122342Chitinophaga pinensis DSM 2588, complete genometranscriptional regulator, XRE family1e-0652
NC_013316:2033906:207919720791972080003807Clostridium difficile R20291, complete genomehypothetical protein1e-0652
NC_014828:1019533:103167510316751031896222Ethanoligenens harbinense YUAN-3 chromosome, complete genomehelix-turn-helix domain protein2e-0651.6
NC_016048:2907702:292277429227742922983210Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein1e-0651.6
NC_021175:2063611:207187220718722072216345Streptococcus oligofermentans AS 1.3089, complete genomeCro/CI family transcriptional regulator1e-0651.6
NC_015732:982774:9996799996791000284606Spirochaeta caldaria DSM 7334 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0651.6
NC_015573:2463123:248569424856942485930237Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0651.6
NC_003212:2413824:244192224419222442404483Listeria innocua Clip11262, complete genomehypothetical protein2e-0651.2
NC_014551:865254:871752871752872057306Bacillus amyloliquefaciens DSM 7, complete genomehypothetical protein2e-0651.2
NC_015977:2966971:298258929825892983200612Roseburia hominis A2-183 chromosome, complete genomehypothetical protein2e-0651.2
NC_000964:2146000:222025722202572220583327Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein2e-0651.2
NC_015913:117966:118288118288118545258Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomehypothetical protein3e-0650.8
NC_008054:1617544:164130916413091641668360Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completePutative transcriptional regulator (Xre family)2e-0650.8
NC_009332:653474:656458656458656808351Streptococcus pyogenes str. Manfredo chromosome, complete genomeDNA-binding phage protein2e-0650.8
NC_009253:3017280:302629030262903026709420Desulfotomaculum reducens MI-1 chromosome, complete genomeXRE family transcriptional regulator2e-0650.8
NC_011837:3272752:329058132905813290907327Clostridium kluyveri NBRC 12016, complete genomehypothetical protein4e-0650.4
NC_014727:1832144:185419718541971854565369Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,transcriptional regulator (xre family)3e-0650.4
NC_003485:1228149:123886512388651239620756Streptococcus pyogenes MGAS8232, complete genomeputative repressor3e-0650.4
NC_002737:1207880:121999812199981220753756Streptococcus pyogenes M1 GAS, complete genomeputative repressor - phage associated3e-0650.4
NC_010001:649000:650678650678651022345Clostridium phytofermentans ISDg, complete genometranscriptional regulator, XRE family3e-0650.4
NC_009487:921884:924292924292924624333Staphylococcus aureus subsp. aureus JH9 chromosome, completeXRE family transcriptional regulator3e-0650.4
NC_009632:921759:924167924167924499333Staphylococcus aureus subsp. aureus JH1 chromosome, completehypothetical protein3e-0650.4
NC_008529:1634403:165655516565551656914360Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeTranscriptional regulator, xre family3e-0650.4
NC_017068:2827568:284872528487252849108384Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative Xre family transcriptional regulator5e-0650.1
NC_013853:2048867:206514420651442065569426Streptococcus mitis B6, complete genometranscriptional regulator4e-0650.1
NC_015875:190041:192949192949193464516Streptococcus pseudopneumoniae IS7493 chromosome, complete genomeXRE family transcriptional regulator4e-0650.1
NC_005957:1037205:104193210419321042381450Bacillus thuringiensis serovar konkukian str. 97-27, completepossible transcriptional regulator; possible DNA-binding protein4e-0650.1
NC_009706:3341250:335909133590913359405315Clostridium kluyveri DSM 555 chromosome, complete genometranscriptional regulator4e-0650.1
NC_005945:1008000:101323210132321013510279Bacillus anthracis str. Sterne, complete genomeDNA-binding protein4e-0650.1
NC_003997:1007139:101333710133371013558222Bacillus anthracis str. Ames, complete genomeDNA-binding protein4e-0650.1
NC_015913:117966:119554119554119772219Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomeXRE family transcriptional regulator6e-0649.7
NC_003485:296140:296536296536296886351Streptococcus pyogenes MGAS8232, complete genomeputative repressor protein8e-0649.3
NC_004606:1107500:114453911445391144889351Streptococcus pyogenes SSI-1, complete genomeputative repressor protein8e-0649.3
NC_004722:1008500:101368010136801014129450Bacillus cereus ATCC 14579, complete genomeTranscriptional repressor7e-0649.3
NC_015589:2878000:287984128798412880455615Desulfotomaculum ruminis DSM 2154 chromosome, complete genomehelix-turn-helix domain-containing protein7e-0649.3
NC_015144:900000:908808908808909149342Weeksella virosa DSM 16922 chromosome, complete genomehelix-turn-helix domain protein7e-0649.3
NC_011725:1032500:103773410377341038183450Bacillus cereus B4264 chromosome, complete genomehypothetical protein6e-0649.3
NC_017208:1050414:105646110564611056910450Bacillus thuringiensis serovar chinensis CT-43 chromosome, completetranscriptional repressor8e-0648.9
NC_004070:747146:751867751867752256390Streptococcus pyogenes MGAS315, complete genomeputative repressor - phage associated9e-0648.9
NC_012891:1277966:129143912914391292212774Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1,hypothetical protein9e-0648.9
NC_011773:1050000:105554110555411055990450Bacillus cereus AH820 chromosome, complete genomehypothetical protein1e-0548.9
NC_016779:991298:994401994401994850450Bacillus cereus F837/76 chromosome, complete genomeXRE family transcriptional regulator1e-0548.9
NC_009328:293000:362637362637363419783Geobacillus thermodenitrificans NG80-2 chromosome, complete genomehypothetical protein1e-0548.9