Some Help

Query: NC_010572:6293417 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 6293417, End: 6316466, Length: 23050

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_021177:19229301922930194704124112Streptomyces fulvissimus DSM 40593, complete genome08796BLASTN svgBLASTP svg
NC_015953:17564931756493177842421932Streptomyces sp. SirexAA-E chromosome, complete genome04825BLASTN svgBLASTP svg
NC_003888:23059012305901232945223552Streptomyces coelicolor A3(2), complete genome03646BLASTN svgBLASTP svg
NC_018750:20052292005229203059225364Streptomyces venezuelae ATCC 10712, complete genome02872BLASTN svgBLASTP svg
NC_009664:37189273718927374705528129Kineococcus radiotolerans SRS30216, complete genome0805BLASTN svgBLASTP svg
NC_012803:13022611302261132380421544Micrococcus luteus NCTC 2665, complete genome0656BLASTN svgBLASTP svg
NC_014210:3763940*3763940379109927160Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,1e-177630BLASTN svgBLASTP svg
NC_015588:19657871965787198857522789Isoptericola variabilis 225 chromosome, complete genome6e-177628BLASTN svgBLASTP svg
NC_015671:15408601540860156478123922Cellvibrio gilvus ATCC 13127 chromosome, complete genome2e-164587BLASTN svgBLASTP svg
NC_015514:24146172414617243874024124Cellulomonas fimi ATCC 484 chromosome, complete genome5e-162579BLASTN svgBLASTP svg
NC_014151:23120002312000233474222743Cellulomonas flavigena DSM 20109 chromosome, complete genome2e-155557BLASTN svgBLASTP svg
NC_013510:1786194*1786194181369827505Thermomonospora curvata DSM 43183, complete genome6e-112412BLASTN svgBLASTP svg
NC_013169:1661135*1661135168009918965Kytococcus sedentarius DSM 20547, complete genome2e-93351BLASTN svgBLASTP svg
NC_010617:14289021428902145226023359Kocuria rhizophila DC2201, complete genome5e-91343BLASTN svgBLASTP svg
NC_013441:27888062788806282218133376Gordonia bronchialis DSM 43247, complete genome6e-69270BLASTN svgBLASTP svg
NC_008726:39159793915979394187225894Mycobacterium vanbaalenii PYR-1, complete genome6e-66260BLASTN svgBLASTP svg
NC_014210:37421123742112376235620245Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,2e-47198BLASTN svgBLASTP svg
NC_019673:16566801656680168172225043Saccharothrix espanaensis DSM 44229 complete genome2e-38168BLASTN svgBLASTP svg
NC_004369:22039472203947222766523719Corynebacterium efficiens YS-314, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013235:40455894045589406814822560Nakamurella multipartita DSM 44233, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_010545:833538335310651623164Corynebacterium urealyticum DSM 7109, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_006351:730007300010112828129Burkholderia pseudomallei K96243 chromosome 2, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_007435:19143751914375195826743893Burkholderia pseudomallei 1710b chromosome II, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_009075:922109221012709934890Burkholderia pseudomallei 668 chromosome II, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_009078:749547495410871533762Burkholderia pseudomallei 1106a chromosome II, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_013947:44133824413382443709923718Stackebrandtia nassauensis DSM 44728 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010172:575005750011716259663Methylobacterium extorquens PA1, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_019964:1961237*1961237198608224846Halovivax ruber XH-70, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015730:1107840*1107840113310925270Roseobacter litoralis Och 149 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007508:1446526*1446526147198625461Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006396:2057209*2057209208818030972Haloarcula marismortui ATCC 43049 chromosome I, complete sequence3e-0661.9BLASTN svgBLASTP svg