Pre_GI: BLASTN Hits

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Query: NC_010572:1872840 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 1872840, End: 1900853, Length: 28014

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003888:5790104*5790104582064330540Streptomyces coelicolor A3(2), complete genome0749BLASTN svgBLASTP svg
NC_003888:73374537337453737640338951Streptomyces coelicolor A3(2), complete genome1e-162581BLASTN svgBLASTP svg
NC_007333:810381*81038185466244282Thermobifida fusca YX, complete genome5e-36161BLASTN svgBLASTP svg
NC_003155:22110872211087223044019354Streptomyces avermitilis MA-4680, complete genome3e-31145BLASTN svgBLASTP svg
NC_013159:50292850292853082127894Saccharomonospora viridis DSM 43017, complete genome1e-24123BLASTN svgBLASTP svg
NC_009142:5698100*5698100573806239963Saccharopolyspora erythraea NRRL 2338, complete genome2e-23119BLASTN svgBLASTP svg
NC_014666:6940532*6940532696752226991Frankia sp. EuI1c chromosome, complete genome2e-20109BLASTN svgBLASTP svg
NC_014391:34456723445672346889423223Micromonospora aurantiaca ATCC 27029 chromosome, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_014391:13179571317957134023122275Micromonospora aurantiaca ATCC 27029 chromosome, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_007333:11298261129826115911729292Thermobifida fusca YX, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015859:18986931898693192889630204Corynebacterium variabile DSM 44702 chromosome, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_012490:44254564425456444448419029Rhodococcus erythropolis PR4, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013440:81178081178083757325794Haliangium ochraceum DSM 14365, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013440:16245611624561164616821608Haliangium ochraceum DSM 14365, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008757:15186215186218056928708Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete3e-0661.9BLASTN svgBLASTP svg