Pre_GI: BLASTN Hits

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Query: NC_010572:1081236 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 1081236, End: 1105926, Length: 24691

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003888:7561923*7561923764778785865Streptomyces coelicolor A3(2), complete genome3e-49204BLASTN svgBLASTP svg
NC_019673:1988853*1988853204493756085Saccharothrix espanaensis DSM 44229 complete genome4e-30141BLASTN svgBLASTP svg
NC_013595:3388000*3388000341046122462Streptosporangium roseum DSM 43021, complete genome4e-30141BLASTN svgBLASTP svg
NC_006361:29200282920028293981019783Nocardia farcinica IFM 10152, complete genome6e-29137BLASTN svgBLASTP svg
NC_015125:222231*22223126106738837Microbacterium testaceum StLB037, complete genome1e-27133BLASTN svgBLASTP svg
NC_003888:77062267706226772825922034Streptomyces coelicolor A3(2), complete genome6e-26127BLASTN svgBLASTP svg
NC_014391:2579919*2579919261467434756Micromonospora aurantiaca ATCC 27029 chromosome, complete genome4e-24121BLASTN svgBLASTP svg
NC_013757:3100515*3100515312110420590Geodermatophilus obscurus DSM 43160, complete genome2e-22115BLASTN svgBLASTP svg
NC_013169:1545890*1545890156556719678Kytococcus sedentarius DSM 20547, complete genome9e-22113BLASTN svgBLASTP svg
NC_014318:5586287*5586287562248536199Amycolatopsis mediterranei U32 chromosome, complete genome9e-22113BLASTN svgBLASTP svg
NC_020133:24219652421965244809926135Mycobacterium liflandii 128FXT, complete genome2e-19105BLASTN svgBLASTP svg
NC_012669:2399649*2399649242257022922Beutenbergia cavernae DSM 12333, complete genome2e-19105BLASTN svgBLASTP svg
NC_008611:3579500*3579500360709927600Mycobacterium ulcerans Agy99, complete genome2e-19105BLASTN svgBLASTP svg
NC_006361:2225072*2225072225678031709Nocardia farcinica IFM 10152, complete genome2e-19105BLASTN svgBLASTP svg
NC_013510:3117837*3117837315092333087Thermomonospora curvata DSM 43183, complete genome9e-19103BLASTN svgBLASTP svg
NC_010572:12937861293786131684623061Streptomyces griseus subsp. griseus NBRC 13350, complete genome3e-18101BLASTN svgBLASTP svg
NC_013521:2193203*2193203221998826786Sanguibacter keddieii DSM 10542, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_021177:71596547159654718278823135Streptomyces fulvissimus DSM 40593, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_018681:3541484*3541484357298031497Nocardia brasiliensis ATCC 700358 chromosome, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_004551:100840*10084012468323844Tropheryma whipplei TW08/27, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_018720:993869*993869102159927731Bifidobacterium asteroides PRL2011 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_018750:69506956950695697113120437Streptomyces venezuelae ATCC 10712, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_014168:1294000*1294000132534231343Segniliparus rotundus DSM 44985 chromosome, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_019673:20513632051363214091689554Saccharothrix espanaensis DSM 44229 complete genome1e-1489.7BLASTN svgBLASTP svg
NC_020409:393329*39332943297939651Desulfovibrio piezophilus str. nov C1TLV30 chromosome, complete5e-1487.7BLASTN svgBLASTP svg
NC_015957:74084667408466745609947634Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_011138:3182807*3182807321165528849Alteromonas macleodii 'Deep ecotype', complete genome3e-1281.8BLASTN svgBLASTP svg
NC_019673:75980267598026762632928304Saccharothrix espanaensis DSM 44229 complete genome3e-1281.8BLASTN svgBLASTP svg
NC_016026:997225*997225103720039976Micavibrio aeruginosavorus ARL-13 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012881:3520956*3520956354109920144Desulfovibrio salexigens DSM 2638, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012881:2310141*2310141233309622956Desulfovibrio salexigens DSM 2638, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012803:15191381519138153782318686Micrococcus luteus NCTC 2665, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_007519:3240864*3240864326641325550Desulfovibrio alaskensis G20 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_008095:4189082*4189082423409745016Myxococcus xanthus DK 1622, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_012590:14465001446500146526018761Corynebacterium aurimucosum ATCC 700975, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_013166:1841446*1841446185969318248Kangiella koreensis DSM 16069, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_014623:4999032*4999032501775318722Stigmatella aurantiaca DW4/3-1 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_019673:3041936*3041936305959917664Saccharothrix espanaensis DSM 44229 complete genome5e-1177.8BLASTN svgBLASTP svg
NC_014472:3530274*3530274355430524032Flavobacteriales bacterium HTCC2170 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_014165:2928464*2928464295012221659Thermobispora bispora DSM 43833 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_013131:32225003222500324156619067Catenulispora acidiphila DSM 44928, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_011666:2109274*2109274213911129838Methylocella silvestris BL2, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014210:27477872747787277340525619Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,1e-0869.9BLASTN svgBLASTP svg
NC_014215:1243125*1243125126864225518Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1,1e-0869.9BLASTN svgBLASTP svg
NC_004193:375416*375416683449308034Oceanobacillus iheyensis HTE831, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_004193:79588*7958811154731960Oceanobacillus iheyensis HTE831, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_014414:16780316780318582918027Parvularcula bermudensis HTCC2503 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_016048:4047922*4047922409182743906Oscillibacter valericigenes Sjm18-20, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_018750:76530007653000767667323674Streptomyces venezuelae ATCC 10712, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015510:6373937*6373937640259928663Haliscomenobacter hydrossis DSM 1100 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013947:56828955682895570912926235Stackebrandtia nassauensis DSM 44728 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013515:550464*55046456909918636Streptobacillus moniliformis DSM 12112, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010556:71776*717769345921684Exiguobacterium sibiricum 255-15, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_010556:26567*265674534518779Exiguobacterium sibiricum 255-15, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_006449:5046*50463138626341Streptococcus thermophilus CNRZ1066, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_006449:121462*12146214259721136Streptococcus thermophilus CNRZ1066, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_006448:5046*50463135826313Streptococcus thermophilus LMG 18311, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_006448:121435*12143514257121137Streptococcus thermophilus LMG 18311, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_011145:37500213750021378616436144Anaeromyxobacter sp. K, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_011769:2294387*2294387231565121265Desulfovibrio vulgaris str. 'Miyazaki F', complete genome7e-0763.9BLASTN svgBLASTP svg
NC_018665:71677*716779339521719Exiguobacterium antarcticum B7 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015760:8914*89142721018297Streptococcus salivarius CCHSS3, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015760:123929*12392914613122203Streptococcus salivarius CCHSS3, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014657:673500*67350069431420815Caldicellulosiruptor owensensis OL chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014219:83888*8388810707623189Bacillus selenitireducens MLS10 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_012121:139741*13974118060640866Staphylococcus carnosus subsp. carnosus TM300, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_000912:356677*35667738016923493Mycoplasma pneumoniae M129, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008609:2446246*2446246249438248137Pelobacter propionicus DSM 2379, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012673:1650139*1650139166872118583Exiguobacterium sp. AT1b, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_012673:2152639*2152639217371821080Exiguobacterium sp. AT1b, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014219:567033*56703358681719785Bacillus selenitireducens MLS10 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014376:3064787*3064787308790423118Clostridium saccharolyticum WM1 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_018704:81733*8173311606034328Amphibacillus xylanus NBRC 15112, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_000908:253979*25397927331819340Mycoplasma genitalium G37, complete genome3e-0661.9BLASTN svgBLASTP svg