Pre_GI: BLASTP Hits

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Query: NC_010572:8352462:8375864 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 8375864, End: 8376523, Length: 660

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010572:1:1950019500206331134Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase1e-90332
NC_010572:8493946:8525297852529785264301134Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase1e-90332
NC_015953:2349503:236470023647002365140441Streptomyces sp. SirexAA-E chromosome, complete genomeputative transposase1e-43176
NC_019673:8161242:8181272818127281823301059Saccharothrix espanaensis DSM 44229 complete genomeTransposase, IS630 family1e-35149
NC_015312:5240653:5245208524520852463111104Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeIntegrase catalytic region1e-31136
NC_008278:5855401:5883223588322358842301008Frankia alni ACN14a, complete genomeTransposase1e-29129
NC_019673:6394319:642709964270996427938840Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein3e-28125
NC_013595:9994000:9994889999488999960101122Streptosporangium roseum DSM 43021, complete genomehypothetical protein9e-28123
NC_013595:3541012:3550637355063735517671131Streptosporangium roseum DSM 43021, complete genomehypothetical protein9e-27120
NC_003888:4750489:475771547577154758560846Streptomyces coelicolor A3(2), complete genometransposase2e-26119
NC_015434:666692:672360672360672881522Verrucosispora maris AB-18-032 chromosome, complete genomeIS630 family transposase2e-26119
NC_016111:3052494:3078576307857630796971122Streptomyces cattleya NRRL 8057, complete genometransposase2e-26119
NC_015434:2375439:239636523963652397258894Verrucosispora maris AB-18-032 chromosome, complete genomeintegrase catalytic domain-containing protein1e-26119
NC_006361:3047788:305867530586753059424750Nocardia farcinica IFM 10152, complete genomeputative transposase3e-1892
NC_003888:8594500:861249886124988613085588Streptomyces coelicolor A3(2), complete genomehypothetical protein1e-1273.2
NC_009921:3551036:358639335863933586575183Frankia sp. EAN1pec, complete genomehypothetical protein6e-1270.9
NC_014098:3030274:304454430445443045037494Bacillus tusciae DSM 2912 chromosome, complete genome2e-1169.7
NC_007777:2186000:2207079220707922082091131Frankia sp. CcI3, complete genomeputative IS630 family transposase4e-1168.2
NC_015957:7408466:744860574486057449471867Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative transposase1e-1066.6
NC_009921:3384116:3401958340195834031331176Frankia sp. EAN1pec, complete genomeputative transposase2e-1065.9
NC_006361:3047788:305833230583323058727396Nocardia farcinica IFM 10152, complete genomeputative transposase3e-1065.5
NC_015656:1618329:162811016281101628718609Frankia symbiont of Datisca glomerata chromosome, complete genomehypothetical protein3e-0858.5