Pre_GI: BLASTP Hits

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Query: NC_010572:8352462:8372673 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 8372673, End: 8373356, Length: 684

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010572:1:1950019500206331134Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase8e-62236
NC_010572:8493946:8525297852529785264301134Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative transposase8e-62236
NC_009921:3098271:315497631549763155374399Frankia sp. EAN1pec, complete genomeconserved hypothetical protein1e-53209
NC_003888:8594500:861249886124988613085588Streptomyces coelicolor A3(2), complete genomehypothetical protein3e-52204
NC_016114:7282882:729034772903477290613267Streptomyces flavogriseus ATCC 33331 chromosome, complete genome3e-27121
NC_006361:3047788:305867530586753059424750Nocardia farcinica IFM 10152, complete genomeputative transposase1e-24113
NC_015312:5240653:5245208524520852463111104Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeIntegrase catalytic region4e-23107
NC_019673:8161242:8181272818127281823301059Saccharothrix espanaensis DSM 44229 complete genomeTransposase, IS630 family7e-22103
NC_008278:5855401:5883223588322358842301008Frankia alni ACN14a, complete genomeTransposase1e-1479.7
NC_013595:9994000:9994889999488999960101122Streptosporangium roseum DSM 43021, complete genomehypothetical protein5e-1374.7
NC_019673:6394319:642768364276836428255573Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein6e-1270.9
NC_016111:3052494:3078576307857630796971122Streptomyces cattleya NRRL 8057, complete genometransposase3e-1065.5
NC_013595:3541012:3550637355063735517671131Streptosporangium roseum DSM 43021, complete genomehypothetical protein4e-0961.6
NC_014836:497350:5037095037095047761068Desulfurispirillum indicum S5 chromosome, complete genomeputative transposase3e-0755.1
NC_014836:497350:5052555052555063221068Desulfurispirillum indicum S5 chromosome, complete genomeputative transposase3e-0755.1
NC_007951:1042291:1047582104758210486521071Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase4e-0755.1
NC_008782:2781229:2781490278149027825691080Acidovorax sp. JS42, complete genomeIntegrase, catalytic region6e-0754.7
NC_009255:1890112:1908471190847119095411071Burkholderia vietnamiensis G4 chromosome 2, complete sequenceputative transposase5e-0754.7
NC_015957:7301546:730834073083407308813474Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-0653.1
NC_009953:2281349:229202622920262292928903Salinispora arenicola CNS-205 chromosome, complete genomehypothetical protein2e-0652.8
NC_015572:1:4060140601416711071Methylomonas methanica MC09 chromosome, complete genomeputative transposase5e-0651.6
NC_010170:3944228:3945315394531539463821068Bordetella petrii, complete genomeputative transposase7e-0650.8
NC_012791:2386000:2403297240329724043881092Variovorax paradoxus S110 chromosome 1, complete genomeIntegrase catalytic region8e-0650.8