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Query: NC_010572:8352462:8365228 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 8365228, End: 8368584, Length: 3357

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013510:5115500:5128288512828851316473360Thermomonospora curvata DSM 43183, complete genomeTPR repeat-containing protein4e-37157
NC_021177:1418213:1426343142634314299873645Streptomyces fulvissimus DSM 40593, complete genomeTPR domain protein1e-26123
NC_021177:1922930:1944831194483119470412211Streptomyces fulvissimus DSM 40593, complete genomehypothetical protein1e-1379.7
NC_016582:10326938:103454851034548510346480996Streptomyces bingchenggensis BCW-1 chromosome, complete genomehypothetical protein9e-1170.1
NC_010397:4909957:4922237492223749270934857Mycobacterium abscessus chromosome Chromosome, complete sequencehypothetical protein4e-1067.8
NC_011726:1827000:1827925182792518302282304Cyanothece sp. PCC 8801, complete genomeTetratricopeptide TPR_2 repeat protein9e-1067
NC_013161:1801904:1803292180329218053102019Cyanothece sp. PCC 8802, complete genomeNB-ARC domain protein3e-0965.1
NC_014815:4621552:4660928466092846624571530Micromonospora sp. L5 chromosome, complete genometpr repeat-containing protein4e-0964.7
NC_014391:4570567:4579405457940545809341530Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeTPR repeat-containing protein4e-0964.7
NC_011004:1174813:1180059118005911835023444Rhodopseudomonas palustris TIE-1, complete genomeTPR repeat-containing protein6e-0963.9
NC_009712:2092440:2100178210017821040353858Candidatus Methanoregula boonei 6A8, complete genomeTPR repeat-containing protein6e-0860.8
NC_008312:5386630:5391012539101253949983987Trichodesmium erythraeum IMS101, complete genomepeptidase-like3e-0655.5
NC_003272:4621554:4636981463698146391132133Nostoc sp. PCC 7120, complete genomehypothetical protein3e-0655.5
NC_005125:4283345:4291713429171342932451533Gloeobacter violaceus PCC 7421, complete genomesimilar to kinesin light chain4e-0654.7