Pre_GI: BLASTP Hits

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Query: NC_010572:8352462:8361744 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 8361744, End: 8363030, Length: 1287

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014828:1632000:1642496164249616437161221Ethanoligenens harbinense YUAN-3 chromosome, complete genome1e-1171.2
NC_020064:3517500:3519924351992435211531230Serratia marcescens FGI94, complete genomearabinose efflux permease family protein2e-23110
NC_002928:1351750:1368903136890313700901188Bordetella parapertussis 12822, complete genomehypothetical protein3e-21103
NC_009076:2396747:2398824239882424000441221Burkholderia pseudomallei 1106a chromosome I, complete sequencemajor facilitator family transporter2e-26120
NC_011283:1901229:1909076190907619102571182Klebsiella pneumoniae 342 chromosome, complete genomemajor facilitator family transporter9e-0858.5
NC_007511:3512100:3514046351404635152721227Burkholderia sp. 383 chromosome 2, complete sequenceMajor facilitator superfamily (MFS_1) transporter1e-23110
NC_013730:3184602:3189438318943831906131176Spirosoma linguale DSM 74, complete genomemajor facilitator superfamily MFS_14e-0653.1
NC_013947:3534209:3556133355613335573621230Stackebrandtia nassauensis DSM 44728 chromosome, complete genomemajor facilitator superfamily MFS_11e-43177
NC_012914:1923500:1929710192971019309541245Paenibacillus sp. JDR-2, complete genomemajor facilitator superfamily MFS_15e-27122
NC_014118:987889:1040404104040410416301227Burkholderia sp. CCGE1002 chromosome chromosome 2, completemajor facilitator superfamily MFS_11e-1171.2
NC_013421:1173051:1194506119450611956961191Pectobacterium wasabiae WPP163, complete genomemajor facilitator superfamily MFS_15e-0652.8
NC_016816:792460:8219218219218230421122Pantoea ananatis LMG 5342, complete genomemajor facilitator superfamily protein2e-24113
NC_015957:3067919:3085164308516430863961233Streptomyces violaceusniger Tu 4113 chromosome, complete genomemajor facilitator superfamily protein1e-30134
NC_015589:38418:5681956819580211203Desulfotomaculum ruminis DSM 2154 chromosome, complete genomemajor facilitator superfamily protein3e-1066.6
NC_021177:118710:1253601253601266191260Streptomyces fulvissimus DSM 40593, complete genomeMajor facilitator superfamily transporter permease4e-85315
NC_017093:2357583:2361764236176423629691206Actinoplanes missouriensis 431, complete genomeputative MFS transporter3e-73275
NC_012108:3824977:3839810383981038410271218Desulfobacterium autotrophicum HRM2, complete genomeputative permease of the major facilitator superfamily2e-1273.9
NC_008800:4013298:4034588403458840358261239Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative transporter protein8e-32138
NC_007434:2810548:2812514281251428138451332Burkholderia pseudomallei 1710b chromosome I, complete sequencetransporter, major facilitator family3e-26120
NC_013956:3641368:3641368364136836425731206Pantoea ananatis LMG 20103 chromosome, complete genomeYgaY2e-24114