Pre_GI: BLASTP Hits

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Query: NC_010572:8352462:8352462 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 8352462, End: 8353472, Length: 1011

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019673:4687289:468973246897324690694963Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, DeoR family5e-36151
NC_015711:4811349:4826421482642148274581038Myxococcus fulvus HW-1 chromosome, complete genomehypothetical protein1e-31137
NC_010162:5129270:5131230513123051322401011Sorangium cellulosum 'So ce 56', complete genomeDeoR family transcriptional regulator3e-27122
NC_013946:305364:305364305364306329966Meiothermus ruber DSM 1279 chromosome, complete genomeHelix-turn-helix type 11 domain-containing protein2e-25116
NC_016582:3763476:376836237683623769348987Streptomyces bingchenggensis BCW-1 chromosome, complete genomeDeoR family transcriptional regulator2e-23110
NC_009380:4702815:470281547028154703813999Salinispora tropica CNB-440 chromosome, complete genomehelix-turn-helix, type 11 domain-containing protein9e-22104
NC_015966:1316901:1317857131785713189001044Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomehelix-turn-helix type 11 domain-containing protein1e-1480.9
NC_013501:1881692:1906452190645219074951044Rhodothermus marinus DSM 4252, complete genomeHelix-turn-helix type 11 domain protein4e-1479.3
NC_016048:3063888:308369630836963084625930Oscillibacter valericigenes Sjm18-20, complete genomeputative DeoR family transcriptional regulator6e-1375.1
NC_012470:1390285:141421814142181415117900Streptococcus equi subsp. zooepidemicus, complete genomeDNA-bind protein1e-1274.3
NC_015589:38418:620836208363015933Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeDeoR family transcriptional regulator2e-1170.5
NC_015500:1236874:124977012497701250702933Treponema brennaborense DSM 12168 chromosome, complete genomehypothetical protein3e-1169.7
NC_015172:1161000:118132511813251182239915Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomehelix-turn-helix, type 11 domain-containing protein3e-1169.3
NC_015690:8614000:862124486212448622191948Paenibacillus mucilaginosus KNP414 chromosome, complete genomeHelix-turn-helix type 11 domain-containing protein2e-1067
NC_015957:7408466:743208074320807433060981Streptomyces violaceusniger Tu 4113 chromosome, complete genomeregulatory protein DeoR3e-1066.6
NC_016630:864601:901843901843902787945Filifactor alocis ATCC 35896 chromosome, complete genomeDeoR family transcriptional regulator3e-1066.2
NC_013169:1845735:186560718656071866323717Kytococcus sedentarius DSM 20547, complete genomepredicted transcriptional regulator6e-0962
NC_014639:1538782:157149115714911572453963Bacillus atrophaeus 1942 chromosome, complete genomeDeoR family transcriptional regulator4e-0859.3
CP002207:1538782:157149115714911572453963Bacillus atrophaeus 1942, complete genomeDeoR family transcriptional regulator4e-0859.3
NC_016935:789849:798132798132799094963Paenibacillus mucilaginosus 3016 chromosome, complete genometranscriptional regulator DeoR5e-0858.9
NC_015690:790500:798606798606799568963Paenibacillus mucilaginosus KNP414 chromosome, complete genometranscriptional regulator DeoR5e-0858.9
NC_018866:2484500:249076824907682491700933Dehalobacter sp. DCA chromosome, complete genomeTranscriptional regulator, DeoR family7e-0858.5
NC_016935:1868839:189117718911771892094918Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein1e-0757.8
NC_009348:2247500:224951722495172250233717Aeromonas salmonicida subsp. salmonicida A449, complete genomeDeoR family transriptional regulator2e-0757
UCMB5137:1594000:161226716122671613205939Bacillus atrophaeus UCMB-5137putative transcriptional regulator2e-0756.6
NC_013891:353625:353625353625354545921Listeria seeligeri serovar 1/2b str. SLCC3954, complete genometranscriptional regulator, putative3e-0756.6
NC_012669:4323490:432415743241574324939783Beutenbergia cavernae DSM 12333, complete genomeHelix-turn-helix type 11 domain protein3e-0756.2
NC_015573:2323268:2338673233867323396831011Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genometranscriptional regulator3e-0756.2
NC_015172:1195782:122718012271801228112933Syntrophobotulus glycolicus DSM 8271 chromosome, complete genomehypothetical protein4e-0652.4
NC_016114:3439273:344138634413863442381996Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeregulatory protein DeoR8e-0651.6
NC_013174:1366786:137721913772191378202984Jonesia denitrificans DSM 20603, complete genomehypothetical protein9e-0651.2