Pre_GI: BLASTP Hits

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Query: NC_010572:82000:119719 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 119719, End: 121101, Length: 1383

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010572:8408500:8424829842482984262111383Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein0921
NC_006350:845513:8923588923588935901233Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein3e-34146
NC_014118:1083492:1094050109405010952731224Burkholderia sp. CCGE1002 chromosome chromosome 2, completehypothetical protein9e-34144
NC_003902:1858349:1871438187143818726521215Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein1e-29131
NC_015684:362236:3663153663153675321218Oligotropha carboxidovorans OM5 chromosome, complete genomehypothetical protein2e-1377.4
NC_011386:136223:1611771611771623941218Oligotropha carboxidovorans OM5, complete genomehypothetical protein2e-1377.4
NC_006138:656000:6664096664096676471239Desulfotalea psychrophila LSv54, complete genomehypothetical protein1e-1275.1
NC_007626:1202704:121201612120161212972957Magnetospirillum magneticum AMB-1, complete genomehypothetical protein2e-1274.3
NC_009428:807577:8204968204968217161221Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomehypothetical protein1e-1068.6
NC_019896:76094:829038290383520618Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein2e-0654.3