Pre_GI: BLASTP Hits

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Query: NC_010572:82000:113076 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 113076, End: 116987, Length: 3912

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010572:8408500:8428943842894384328543912Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative exodeoxyribonuclease-like protein02469
NC_014370:885937:9236959236959272943600Prevotella melaninogenica ATCC 25845 chromosome chromosome I,hypothetical protein3e-119430
NC_010814:1441327:1446527144652714501713645Geobacter lovleyi SZ, complete genomeExodeoxyribonuclease V9e-74279
NC_015562:1413264:1422784142278414260893306Methanotorris igneus Kol 5 chromosome, complete genomeexodeoxyribonuclease V2e-36155
NC_017955:2494640:2540042254004225419881947Modestobacter marinus, complete genomeATP-dependent exoDNAse subunit alpha/helicase superfamily I protein2e-23112
NC_017285:671546:6896006896006917982199Chlamydophila pneumoniae LPCoLN chromosome, complete genomeRecD/TraA family helicase2e-21105
NC_002179:667182:6852326852326874302199Chlamydophila pneumoniae AR39, complete genomeexodeoxyribonuclease V, alpha subunit2e-21105
NC_009012:2661795:2675408267540826776482241Clostridium thermocellum ATCC 27405, complete genomehelicase, RecD/TraA family2e-1999
NC_003366:2494907:2494907249490724971412235Clostridium perfringens str. 13, complete genomeexodeoxyribonuclease V alpha subunit8e-1997.1
NC_008261:2708929:2708929270892927111632235Clostridium perfringens ATCC 13124, complete genomehelicase, RecD/TraA family1e-1896.3
NC_015725:926824:9456689456689479382271Mycoplasma bovis Hubei-1 chromosome, complete genomeexodeoxyribonuclease V subunit alpha2e-1895.9
NC_010793:81219:8427684276864712196Orientia tsutsugamushi str. Ikeda, complete genomeexodeoxyribonuclease V alpha subunit3e-1895.1
NC_009481:1365000:1385306138530613869191614Synechococcus sp. WH 7803 chromosome, complete genomeexodeoxyribonuclease V subunit alpha6e-1894
NC_010723:485874:5040445040445062632220Clostridium botulinum E3 str. Alaska E43, complete genomehelicase, RecD/TraA family8e-1790.5
NC_010172:5447189:83038303105042202Methylobacterium extorquens PA1, complete genomehelicase, RecD/TraA family5e-1584.3
NC_014833:2988814:2995209299520929974672259Ruminococcus albus 7 chromosome, complete genomehelicase, RecD/TraA family6e-1584
NC_008609:1976403:2006218200621820084042187Pelobacter propionicus DSM 2379, complete genomehelicase, RecD/TraA family2e-1482.8
NC_012791:4794362:4818231481823148203572127Variovorax paradoxus S110 chromosome 1, complete genomeexodeoxyribonuclease V, alpha subunit2e-1482.4
NC_014365:2037506:2059009205900920611712163Desulfarculus baarsii DSM 2075 chromosome, complete genomehelicase, RecD/TraA family9e-1480.1
NC_008435:2658986:2722151272215127243102160Rhodopseudomonas palustris BisA53, complete genomehypothetical protein2e-1275.9
NC_018645:4945698:4951424495142449534392016Desulfobacula toluolica Tol2, complete genomeexodeoxyribonuclease V subunit alpha6e-1274.3
NC_015573:776209:7777177777177798042088Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelicase, RecD/TraA family1e-1173.2
NC_011365:1103927:1116217111621711184032187Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomehelicase, RecD/TraA family8e-1170.5
NC_011027:817311:8179938179938201942202Chlorobaculum parvum NCIB 8327, complete genomehelicase, RecD/TraA family1e-1070.1
NC_011296:281930:2901722901722957035532Thermodesulfovibrio yellowstonii DSM 11347, complete genomehypothetical protein2e-1069.7
NC_014365:2037506:2040817204081720430452229Desulfarculus baarsii DSM 2075 chromosome, complete genomeATP-dependent RecD/TraA family DNA helicase2e-1069.3
NC_010125:2884762:2896416289641628986022187Gluconacetobacter diazotrophicus PAl 5, complete genomeputative exodeoxyribonuclease3e-1068.6
NC_010694:3055403:3053556305355630554061851Erwinia tasmaniensis, complete genomeExodeoxyribonuclease V alpha chain4e-1068.6
NC_018664:239000:2433912433912456162226Clostridium acidurici 9a chromosome, complete genomeRecD/TraA family helicase RecD9e-1067
NC_013422:991500:1012572101257210154032832Halothiobacillus neapolitanus c2, complete genomeconjugative relaxase domain protein8e-1067
NC_015713:2453409:2463825246382524652491425Simkania negevensis Z chromosome gsn.131, complete genomeexodeoxyribonuclease V subunit alpha2e-0966.2
NC_016048:522637:5316525316525329381287Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein2e-0965.9
NC_011206:2512667:2519649251964925216011953Acidithiobacillus ferrooxidans ATCC 53993, complete genomeexodeoxyribonuclease V, alpha subunit3e-0965.5
NC_010943:3069082:3094419309441930971992781Stenotrophomonas maltophilia K279a, complete genomeputative conjugal transfer protein TraA4e-0965.1
NC_019697:1696000:1699454169945417017062253Chamaesiphon minutus PCC 6605, complete genomehelicase, putative, RecD/TraA family4e-0964.7
NC_011757:5693584:5700531570053157027832253Methylobacterium chloromethanicum CM4, complete genomehelicase, RecD/TraA family5e-0964.7
NC_015377:34445:5672856728596222895Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequenceTrwC protein5e-0964.7
NC_010125:955863:9835099835099856952187Gluconacetobacter diazotrophicus PAl 5, complete genomeputative exodeoxyribonuclease V alpha chain6e-0964.3
NC_018691:3496420:3496420349642034983661947Alcanivorax dieselolei B5 chromosome, complete genomeExodeoxyribonuclease V alpha chain5e-0964.3
NC_009007:57804:7601176011793463336Rhodobacter sphaeroides 2.4.1 plasmid A, partial sequenceTraI9e-0963.5
NC_013929:6526745:6536994653699465392552262Streptomyces scabiei 87.22 chromosome, complete genomeDNA-binding protein1e-0863.2
NC_014500:2479814:2498288249828825003332046Dickeya dadantii 3937 chromosome, complete genomeexonuclease V (RecBCD complex), subunit alpha1e-0863.2
NC_003155:6444500:6456160645616064584362277Streptomyces avermitilis MA-4680, complete genomeexodeoxyribonuclease V3e-0862.4
NC_007575:1694877:1701208170120817045463339Sulfurimonas denitrificans DSM 1251, complete genomeexonuclease V subunit alpha3e-0862.4
NC_009633:760872:7692317692317714952265Alkaliphilus metalliredigens QYMF chromosome, complete genomerecombinase D3e-0862
NC_009922:2721343:2731601273160127338472247Alkaliphilus oremlandii OhILAs, complete genomehelicase, RecD/TraA family3e-0862
NC_010511:6067000:6080978608097860832122235Methylobacterium sp. 4-46 chromosome, complete genomerecombinase D3e-0862
NC_003910:187630:2001942001942025602367Colwellia psychrerythraea 34H, complete genomeputative helicase7e-0860.8
NC_015177:258504:2653212653212667121392Pedobacter saltans DSM 12145 chromosome, complete genomeexonuclease V subunit alpha6e-0860.8
NC_009665:639914:6482456482456503982154Shewanella baltica OS185 chromosome, complete genomeATPase AAA6e-0860.8
NC_011663:674069:6824066824066845592154Shewanella baltica OS223 chromosome, complete genomeATPase AAA6e-0860.8
NC_012796:4075583:4125454412545441276252172Desulfovibrio magneticus RS-1, complete genomehelicase RecD/TraA family protein6e-0860.8
NC_012796:2090000:2095549209554920977262178Desulfovibrio magneticus RS-1, complete genomehelicase RecD/TraA family protein8e-0860.5
NC_009495:183767:2021422021422043762235Clostridium botulinum A str. ATCC 3502 chromosome, complete genomehelicase, RecD/TraA family8e-0860.5
NC_007722:2954876:2959510295951029620652556Erythrobacter litoralis HTCC2594, complete genomehypothetical protein1e-0760.1
NC_015573:776209:8021148021148046932580Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehypothetical protein3e-0758.9
NC_010337:2339056:2339823233982323419762154Heliobacterium modesticaldum Ice1, complete genomeexodeoxyribonuclease V, alpha chain, RecD3e-0758.9
NC_014394:2577949:2590285259028525926032319Gallionella capsiferriformans ES-2 chromosome, complete genomeAAA ATPase5e-0758.2
NC_013521:302574:3137363137363164802745Sanguibacter keddieii DSM 10542, complete genomehypothetical protein4e-0758.2
NC_011991:65368:6536865368694384071Agrobacterium vitis S4 plasmid pAtS4b, complete sequenceTi-type conjugative transfer relaxase TraA8e-0757.4
NC_020134:2772500:2784877278487727870902214Clostridium stercorarium subsp. stercorarium DSM 8532, completehelicase, RecD/TraA family1e-0656.6
NC_007722:851129:8691878691878720992913Erythrobacter litoralis HTCC2594, complete genomeTrwC protein2e-0656.2
NC_014550:3316115:3316115331611533186702556Arthrobacter arilaitensis Re117, complete genome2e-0655.8
NC_008278:6885254:6885254688525468896694416Frankia alni ACN14a, complete genomehypothetical protein; Putative conjugal transfer protein traA3e-0655.5
NC_009445:6424000:6443614644361464466253012Bradyrhizobium sp. ORS 278 chromosome, complete genomeconjugal transfer relaxase TraA3e-0655.5
NC_014819:25765:4311743117462603144Asticcacaulis excentricus CB 48 plasmid pASTEX02, completeconjugative relaxase domain protein3e-0655.5
NC_015508:296856:2968562968563006473792Agrobacterium sp. H13-3 chromosome linear, complete sequenceConjugal transfer protein traA3e-0655.5
NC_016631:3917253:3931643393164339343962754Granulicella mallensis MP5ACTX8 chromosome, complete genomeconjugative relaxase domain-containing protein3e-0655.5
NC_013132:7954000:7969595796959579722072613Chitinophaga pinensis DSM 2588, complete genomeconjugative relaxase domain protein4e-0655.1
NC_007946:3125577:3141071314107131428971827Escherichia coli UTI89, complete genomeexodeoxyribonuclease V alpha chain5e-0654.7
NC_008253:2965573:2981289298128929831151827Escherichia coli 536, complete genomeexodeoxyribonuclease V alpha chain5e-0654.7
NC_011742:3057444:3072950307295030747761827Escherichia coli S88 chromosome, complete genomeexonuclease V subunit alpha5e-0654.7
NC_010498:3023442:3039266303926630410921827Escherichia coli SMS-3-5, complete genomeexodeoxyribonuclease V, alpha subunit5e-0654.7
NC_007613:2699500:2713369271336927151951827Shigella boydii Sb227, complete genomeATP-dependent dsDNA/ssDNA exonuclease V subunit5e-0654.7
NC_013361:3823347:3839171383917138409971827Escherichia coli O26:H11 str. 11368 chromosome, complete genomeexonuclease V subunit alpha5e-0654.7
NC_011745:3197584:3213407321340732152331827Escherichia coli ED1a chromosome, complete genomeexonuclease V subunit alpha4e-0654.7
NC_015740:3678342:3676216367621636783452130Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeexodeoxyribonuclease V subunit alpha6e-0654.3