Pre_GI: BLASTP Hits

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Query: NC_010572:6293417:6312563 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 6312563, End: 6313312, Length: 750

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021177:1922930:192476819247681925520753Streptomyces fulvissimus DSM 40593, complete genomeIntegral membrane protein3e-87321
NC_018750:2005229:200702720070272007770744Streptomyces venezuelae ATCC 10712, complete genomeputative integral membrane protein2e-63242
NC_013385:1064188:106506510650651065727663Ammonifex degensii KC4, complete genomeRhomboid family protein5e-21101
NC_015185:174847:177842177842178549708Desulfurobacterium thermolithotrophum DSM 11699 chromosome,Rhomboid family protein7e-21100
NC_011420:2692857:270726927072692707973705Rhodospirillum centenum SW, complete genomerhomboid family membrane protein8e-2097.4
NC_011297:1167615:117313611731361173816681Dictyoglomus thermophilum H-6-12, complete genomerhomboid family protein6e-1994.7
NC_011661:1332309:135355413535541354228675Dictyoglomus turgidum DSM 6724, complete genomeRhomboid family protein6e-1994.4
NC_012440:373863:376782376782377456675Persephonella marina EX-H1, complete genomerhomboid family protein5e-1891.3
NC_014210:3742112:375661137566113757375765Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,Rhomboid family protein5e-1788.2
NC_016629:3543432:355762435576243558340717Desulfovibrio africanus str. Walvis Bay chromosome, completerhomboid family protein8e-1787.4
NC_014221:38000:419504195042600651Truepera radiovictrix DSM 17093 chromosome, complete genomeRhomboid family protein8e-1787.4
NC_013526:439813:445356445356446048693Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeRhomboid family protein4e-1685.1
NC_009485:8187321:818732181873218188058738Bradyrhizobium sp. BTAi1 chromosome, complete genomehypothetical protein4e-1685.1
NC_002977:1600350:160035016003501601063714Methylococcus capsulatus str. Bath, complete genomerhomboid family protein9e-1684
NC_013939:212331:219741219741220466726Deferribacter desulfuricans SSM1, complete genomerhomboid family protein2e-1583.2
NC_015259:673662:697335697335698087753Polymorphum gilvum SL003B-26A1 chromosome, complete genomeRhomboid family protein4e-1582
NC_017030:3981310:3995659399565939976682010Corallococcus coralloides DSM 2259 chromosome, complete genomerhomboid family protein4e-1582
NC_015732:140087:157170157170157925756Spirochaeta caldaria DSM 7334 chromosome, complete genomePeptidase S54, rhomboid domain-containing protein6e-1477.8
NC_014100:1144463:114999611499961150649654Caulobacter segnis ATCC 21756 chromosome, complete genomerhomboid family protein1e-0757
NC_002696:2829002:284363628436362844292657Caulobacter crescentus CB15, complete genomerhomboid family protein2e-0756.6
NC_014931:1642179:1667784166778416692621479Variovorax paradoxus EPS chromosome, complete genomeRhomboid family protein2e-0756.2
NC_012673:2023297:202329720232972024022726Exiguobacterium sp. AT1b, complete genomeRhomboid family protein2e-0653.1
NC_020300:646500:652846652846653586741Bartonella australis Aust/NH1, complete genomeputative membrane protein, rhomboid family2e-0652.8
NC_011144:1264871:127012112701211270735615Phenylobacterium zucineum HLK1, complete genomerhomboid family protein5e-0651.6