Pre_GI: BLASTP Hits

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Query: NC_010572:6293417:6302617 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 6302617, End: 6303015, Length: 399

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021177:1922930:193505119350511935449399Streptomyces fulvissimus DSM 40593, complete genomeIntegral membrane protein2e-60230
NC_015953:1756493:176560117656011765999399Streptomyces sp. SirexAA-E chromosome, complete genomeCytochrome-c oxidase2e-56217
NC_003888:2305901:231636323163632316761399Streptomyces coelicolor A3(2), complete genomeintegral membrane protein2e-55213
NC_015588:1965787:197692719769271977328402Isoptericola variabilis 225 chromosome, complete genomehypothetical protein4e-24110
NC_015671:1540860:155060715506071551005399Cellvibrio gilvus ATCC 13127 chromosome, complete genomehypothetical protein2e-1994.7
NC_014151:2312000:232315023231502323548399Cellulomonas flavigena DSM 20109 chromosome, complete genomehypothetical protein4e-1993.2
NC_015514:2414617:242812024281202428518399Cellulomonas fimi ATCC 484 chromosome, complete genomehypothetical protein1e-1891.7
NC_019673:1656680:167369516736951674111417Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein1e-1788.6
NC_014643:2056280:214614621461462146547402Rothia dentocariosa ATCC 17931 chromosome, complete genomecytochrome c oxidase polypeptide IV2e-1684.3
NC_009664:3718927:372894237289423729343402Kineococcus radiotolerans SRS30216, complete genomeputative integral membrane protein5e-1683.2
NC_014210:3763940:376671237667123767137426Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,integral membrane protein7e-1475.9
NC_013169:1661135:166963416696341670038405Kytococcus sedentarius DSM 20547, complete genomehypothetical protein4e-1270.1
NC_012803:1302261:131788413178841318285402Micrococcus luteus NCTC 2665, complete genomehypothetical protein7e-1269.3
NC_004369:2203947:221555422155542215985432Corynebacterium efficiens YS-314, complete genomehypothetical protein1e-1168.2
NC_016802:1615748:162688316268831627314432Corynebacterium diphtheriae HC02 chromosome, complete genomecytochrome C oxidase subunit1e-0961.6
NC_010617:1428902:144132014413201441724405Kocuria rhizophila DC2201, complete genomehypothetical protein1e-0755.1