Pre_GI: BLASTP Hits

Some Help

Query: NC_010572:4181403:4196242 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 4196242, End: 4196685, Length: 444

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013929:6251989:626259662625966263048453Streptomyces scabiei 87.22 chromosome, complete genomemobile element trasfer protein2e-28124
NC_016114:3008500:302247130224713022923453Streptomyces flavogriseus ATCC 33331 chromosome, complete genomemobile element trasfer protein2e-25114
NC_013929:5952380:596370659637065964155450Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein9e-24108
NC_015957:10403997:104264441042644410426935492Streptomyces violaceusniger Tu 4113 chromosome, complete genomeputative integral membrane plasmid transfer protein8e-0959.3