Pre_GI: BLASTP Hits

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Query: NC_010572:3878660:3887779 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 3887779, End: 3890298, Length: 2520

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003155:3994:7554755496262073Streptomyces avermitilis MA-4680, complete genometransposase1e-147524
NC_008271:119957:1357071357071381062400Rhodococcus sp. RHA1 plasmid pRHL3, complete sequencepossible transposase2e-59231
NC_008705:1790222:1821247182124718234602214Mycobacterium sp. KMS, complete genomephage integrase family protein3e-21104
NC_003155:3994:9886988610635750Streptomyces avermitilis MA-4680, complete genomehypothetical protein3e-1894.4
NC_012803:691215:7156787156787171531476Micrococcus luteus NCTC 2665, complete genomesite-specific recombinase, integrase family6e-1377
NC_012803:2195808:2233821223382122351011281Micrococcus luteus NCTC 2665, complete genomesite-specific recombinase, integrase family1e-1172.4
NC_015382:266000:2684922684922703271836Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequencePhage integrase family protein1e-0656.2
NC_012720:114489:1336191336191354541836Burkholderia glumae BGR1 plasmid bglu_3p, complete sequencePhage integrase family protein4e-0654.3