Pre_GI: BLASTP Hits

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Query: NC_010572:1748668:1753166 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 1753166, End: 1754278, Length: 1113

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021177:6662668:6676348667634866774601113Streptomyces fulvissimus DSM 40593, complete genomeSolute-binding protein2e-163575
NC_016114:1435436:1439779143977914408881110Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeABC transporter substrate-binding protein1e-147522
NC_015953:5908467:5922472592247259235811110Streptomyces sp. SirexAA-E chromosome, complete genomeputative ABC transporter solute-binding protein3e-145514
NC_003888:6568000:6589575658957565906901116Streptomyces coelicolor A3(2), complete genomesolute-binding protein4e-132471
NC_003155:2730469:2734874273487427359831110Streptomyces avermitilis MA-4680, complete genomeABC transporter solute-binding protein5e-124444
NC_003888:4031299:4047138404713840482561119Streptomyces coelicolor A3(2), complete genomesecreted solute-binding protein1e-97357
NC_013739:5705325:5709242570924257103841143Conexibacter woesei DSM 14684, complete genomeputative sugar ABC transporter, substrate- binding protein7e-72271
NC_013929:2375613:2381873238187323829641092Streptomyces scabiei 87.22 chromosome, complete genomesolute-binding protein7e-71268
NC_018750:6315802:6332963633296363340271065Streptomyces venezuelae ATCC 10712, complete genomeL-arabinose-binding periplasmic protein precursor AraF2e-61236
NC_013510:3117837:3122280312228031233561077Thermomonospora curvata DSM 43183, complete genomeD-xylose-binding periplasmic ABC transporter protein4e-40165
NC_006510:1901954:1910407191040719114981092Geobacillus kaustophilus HTA426, complete genomeD-xylose ABC transporter (substrate-binding protein)8e-37154
NC_018000:4958637:4958637495863749596741038Sinorhizobium fredii USDA 257 chromosome, complete genomeD-xylose-binding periplasmic protein XylF1e-36154
NC_004337:3590323:371279437127943713786993Shigella flexneri 2a str. 301, complete genomexylose binding protein2e-36153
NC_017323:1644000:1689453168945316904901038Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequenceD-xylose ABC transporter periplasmic substrate-binding protein2e-35150
NC_008800:4488112:450847545084754509470996Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,D-xylose transporter subunit XylF2e-35150
NC_020908:2788852:2794694279469427957311038Octadecabacter arcticus 238, complete genomeputative sugar ABC transporter extracellular solute-binding protein3e-35149
NC_015224:4426167:444330844433084444303996Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,D-xylose transporter subunit XylF7e-35148
NC_019897:905185:9067379067379078701134Thermobacillus composti KWC4 chromosome, complete genomexylose ABC transporter substrate-binding protein2e-34146
NC_014720:154111:2001632001632012181056Caldicellulosiruptor kronotskyensis 2002 chromosome, completed-xylose ABC transporter, periplasmic substrate-binding protein2e-34146
NC_017160:4508000:452561245256124526607996Yersinia pestis D182038 chromosome, complete genomesugar-binding periplasmic protein1e-33144
NC_010465:62348:641306413065125996Yersinia pseudotuberculosis YPIII, complete genomeD-xylose ABC transporter, periplasmic substrate-binding protein1e-33144
NC_008150:4634695:464761846476184648613996Yersinia pestis Antiqua, complete genomesugar-binding periplasmic protein1e-33144
NC_007644:2099878:2109667210966721108121146Moorella thermoacetica ATCC 39073, complete genomePeriplasmic binding protein/LacI transcriptional regulator1e-33144
NC_010320:143109:1535381535381546441107Thermoanaerobacter sp. X514 chromosome, complete genomeD-xylose ABC transporter periplasmic substrate-binding protein2e-33143
NC_014538:187747:1934041934041945101107Thermoanaerobacter sp. X513 chromosome, complete genomeD-xylose ABC transporter periplasmic substrate-binding protein2e-33143
NC_014931:6203872:6246643624664362476651023Variovorax paradoxus EPS chromosome, complete genomeD-xylose ABC transporter, periplasmic substrate-binding protein1e-31137
NC_014837:33014:541895418955181993Pantoea sp. At-9b chromosome, complete genomeD-xylose ABC transporter periplasmic substrate-binding protein1e-30134
NC_014960:1910202:1924235192423519253621128Anaerolinea thermophila UNI-1, complete genomeD-xylose ABC transporter substrate binding protein precursor2e-30133
NC_014310:2017927:2033622203362220346411020Ralstonia solanacearum PSI07 megaplasmid, complete sequenceD-xylose-binding periplasmic protein2e-30133
NC_010407:151599:1577231577231588411119Clavibacter michiganensis subsp. sepedonicus chromosome, completeputative extracellular sugar-binding protein3e-29129
NC_017093:5410932:5418784541878454199111128Actinoplanes missouriensis 431, complete genomeputative ABC transporter substrate-binding protein7e-29128
NC_013406:1640787:1652061165206116534881428Paenibacillus sp. Y412MC10 chromosome, complete genomeABC-type xylose transport system periplasmic component-like protein7e-29128
NC_014364:773500:7789777789777800801104Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeD-xylose ABC transporter, periplasmic substrate-binding protein2e-28126
NC_014206:1694330:1704551170455117056301080Geobacillus sp. C56-T3 chromosome, complete genomeABC transporter substrate-binding protein2e-27123
NC_006087:28490:3409234092351621071Leifsonia xyli subsp. xyli str. CTCB07, complete genomemultiple sugar-binding periplasmic receptor9e-27121
NC_006510:1921541:1949018194901819500971080Geobacillus kaustophilus HTA426, complete genomeABC transporter (substrate-binding protein)7e-27121
NC_016593:2015321:2022353202235320234321080Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeABC-type xylose transport system periplasmic component-like protein7e-27121
NC_009328:1903291:1908123190812319091991077Geobacillus thermodenitrificans NG80-2 chromosome, complete genomesugar ABC transporter ATP-binding protein3e-26119
NC_015732:30472:3538635386364261041Spirochaeta caldaria DSM 7334 chromosome, complete genomeD-xylose ABC transporter substrate-binding protein5e-25115
NC_015519:1888917:1900190190019019012661077Tepidanaerobacter sp. Re1 chromosome, complete genomeperiplasmic sugar-binding protein1e-24114
NC_014829:1376253:1378907137890713800101104Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator1e-24114
NC_014720:154111:1948081948081958961089Caldicellulosiruptor kronotskyensis 2002 chromosome, completemonosaccharide-transporting atpase2e-24114
NC_015732:30472:3657136571376861116Spirochaeta caldaria DSM 7334 chromosome, complete genomeABC transporter2e-22107
NC_015559:3511231:3526358352635835274521095Marinomonas posidonica IVIA-Po-181 chromosome, complete genomeputative sugar uptake ABC transporter periplasmic solute-binding protein precursor2e-22107
NC_016641:2894899:2919994291999429210791086Paenibacillus terrae HPL-003 chromosome, complete genomeMultiple sugar-binding periplasmic receptor chvE5e-22105
NC_020291:5093138:5117428511742851185581131Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeABC-type xylose transport system, periplasmic component4e-22105
NC_014483:1146682:1158577115857711596621086Paenibacillus polymyxa E681 chromosome, complete genomeMultiple sugar-binding periplasmic receptor chvE precursor1e-21104
NC_019973:6102442:6130288613028861313581071Mesorhizobium australicum WSM2073, complete genomeABC-type xylose transport system, periplasmic component3e-2099.4
NC_014014:153837:1744281744281756241197Mycoplasma crocodyli MP145 chromosome, complete genome46 kDa surface antigen (p46)7e-1995.1
NC_013714:2350749:2353603235360323547601158Bifidobacterium dentium Bd1, complete genomeHypothetical secreted protein8e-1788.2
NC_008010:321561:328159328159328701543Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceD-xylose-binding periplasmic protein precursor2e-1170.5
NC_019897:905185:9079969079969090931098Thermobacillus composti KWC4 chromosome, complete genomexylose ABC transporter substrate-binding protein1e-1067.8
NC_006510:1921541:192787719278771928833957Geobacillus kaustophilus HTA426, complete genomesugar ABC transporter (sugar-binding protein)2e-1067
NC_014650:2143033:215129121512912152265975Geobacillus sp. Y4.1MC1 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator7e-1065.5
NC_008010:200796:201892201892202842951Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceperiplasmic binding protein/LacI transcriptional regulator7e-1065.5
NC_014393:4612301:4623049462304946240801032Clostridium cellulovorans 743B chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator7e-1065.1
NC_015519:801929:8102998102998113661068Tepidanaerobacter sp. Re1 chromosome, complete genomeD-galactose-binding periplasmic protein8e-0961.6
NC_015732:2057895:205789520578952058890996Spirochaeta caldaria DSM 7334 chromosome, complete genomeD-galactose ABC transporter substrate binding protein1e-0861.2
NC_017954:934616:9372219372219382581038Thermogladius cellulolyticus 1633 chromosome, complete genomesugar ABC transporter periplasmic protein2e-0860.8
NC_014393:4612301:4624299462429946253601062Clostridium cellulovorans 743B chromosome, complete genomeputative galactoside ABC transporter2e-0860.8
NC_015519:1888917:1898959189895919000261068Tepidanaerobacter sp. Re1 chromosome, complete genomeD-galactose-binding periplasmic protein4e-0859.3
NC_013205:2332174:233878923387892339754966Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,periplasmic binding protein/LacI transcriptional regulator7e-0858.5
NC_014150:2617072:2636287263628726373151029Brachyspira murdochii DSM 12563 chromosome, complete genomegalactose/glucose-binding protein2e-0757
NC_008010:321561:329446329446329961516Deinococcus geothermalis DSM 11300 plasmid 1, complete sequenceD-xylose-binding periplasmic protein precursor2e-0757
NC_012586:425615:4387904387904398541065Rhizobium sp. NGR234 plasmid pNGR234b, complete sequenceribose ABC transporter, ribose-binding protein5e-0755.8
NC_010556:2328303:234419623441962345110915Exiguobacterium sibiricum 255-15, complete genomeperiplasmic binding protein/LacI transcriptional regulator1e-0654.7
NC_018531:1991218:199227719922771993245969Arthrobacter sp. Rue61a chromosome, complete genomeD-ribose-binding protein RbsB1e-0654.3
NC_004578:3921199:393944239394423940371930Pseudomonas syringae pv. tomato str. DC3000, complete genomesugar ABC transporter, periplasmic sugar-binding protein2e-0653.9
NC_020291:5093138:5093138509313850942081071Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeD-galactose-binding periplasmic protein MglB3e-0653.1
NC_015566:2039431:206700920670092067938930Serratia sp. AS12 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator7e-0652
NC_003317:392271:409632409632410609978Brucella melitensis 16M chromosome I, complete sequenceD-RIBOSE-BINDING PERIPLASMIC PROTEIN PRECURSOR1e-0551.6