Pre_GI: BLASTP Hits

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Query: NC_010572:1293786:1303036 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 1303036, End: 1304442, Length: 1407

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021177:7159654:7170906717090671723271422Streptomyces fulvissimus DSM 40593, complete genomeType I phosphodiesterase/nucleotide pyrophosphatase0847
NC_018750:6950695:6964735696473569661441410Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein0738
NC_018524:1279156:1282704128270412841011398Nocardiopsis alba ATCC BAA-2165 chromosome, complete genometype I phosphodiesterase / nucleotide pyrophosphatase family protein6e-155547
NC_008010:1:7002700284051404Deinococcus geothermalis DSM 11300 plasmid 1, complete sequencetype I phosphodiesterase/nucleotide pyrophosphatase8e-131467
NC_010162:1222000:1232633123263312339101278Sorangium cellulosum 'So ce 56', complete genomehypothetical protein5e-129461
NC_010546:4590994:4599919459991946013131395Cyanothece sp. ATCC 51142 chromosome circular, complete sequencehypothetical protein9e-123440
NC_014655:424486:4348384348384362081371Leadbetterella byssophila DSM 17132 chromosome, complete genometype i phosphodiesterase/nucleotide pyrophosphatase4e-118425