Pre_GI: BLASTP Hits

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Query: NC_010572:1081236:1104013 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 1104013, End: 1105035, Length: 1023

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006361:2920028:2920028292002829210681041Nocardia farcinica IFM 10152, complete genomehypothetical protein8e-84310
NC_003063:304962:331789331789332778990Agrobacterium tumefaciens str. C58 chromosome linear, completehypothetical protein1e-28127
NC_015559:1478114:149684014968401497820981Marinomonas posidonica IVIA-Po-181 chromosome, complete genomehypothetical protein3e-22105
NC_014171:723155:7477697477697487701002Bacillus thuringiensis BMB171 chromosome, complete genomehydroxymethylpyrimidine-binding protein2e-1686.7
NC_012914:5618000:5645455564545556464801026Paenibacillus sp. JDR-2, complete genomeNMT1/THI5 like domain protein3e-1686.3
NC_009654:4624459:4635671463567146366811011Marinomonas sp. MWYL1, complete genomeNMT1/THI5-like domain-containing protein9e-1684.7
NC_005945:754517:7545177545177555181002Bacillus anthracis str. Sterne, complete genomeABC transporter, substrate-binding protein, putative9e-1684.7
NC_020210:2133996:2182309218230921833401032Geobacillus sp. GHH01, complete genomeputative aliphatic sulfonate ABC transporter substrate-binding protein1e-1584
NC_014931:4985500:4997508499750849985421035Variovorax paradoxus EPS chromosome, complete genomeNMT1/THI5 like domain protein3e-1582.8
NC_012914:5372712:5391435539143553924931059Paenibacillus sp. JDR-2, complete genomeNMT1/THI5 like domain protein2e-1376.6
NC_017075:4259460:4279348427934842803911044Rubrivivax gelatinosus IL144, complete genomeNMT1/THI5 like domain-containing protein2e-1273.2
NC_006138:656000:661717661717662688972Desulfotalea psychrophila LSv54, complete genomehypothetical protein7e-1272
NC_012108:481657:497894497894498832939Desulfobacterium autotrophicum HRM2, complete genomeABC-type transporter, substrate-binding protein8e-1271.6
NC_014829:4565467:456697645669764567959984Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeABC transporter substrate-binding protein2e-1170.5
NC_014623:7133149:7143471714347171445141044Stigmatella aurantiaca DW4/3-1 chromosome, complete genomehydroxymethylpyrimidine-binding protein5e-1168.9
NC_013223:2609697:260969726096972610635939Desulfohalobium retbaense DSM 5692, complete genomeNMT1/THI5 like domain protein5e-1065.5
NC_019974:1115553:117688711768871177852966Natronococcus occultus SP4, complete genomeABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component1e-0963.9
NC_018644:137755:162386162386163333948Alpha proteobacterium HIMB59 chromosome, complete genomeNMT1/THI5 family protein2e-0963.9
NC_013173:1712138:1712138171213817153653228Desulfomicrobium baculatum DSM 4028, complete genomediguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)4e-0962.4
NC_013745:177700:177700177700178671972Haloterrigena turkmenica DSM 5511 plasmid pHTUR02, completeNMT1/THI5 like domain protein6e-0962
NC_007644:469181:4691814691814702241044Moorella thermoacetica ATCC 39073, complete genomeABC transporter, substrate-binding protein, aliphatic sulphonates1e-0757.4
NC_007645:2049988:2049988204998820529873000Hahella chejuensis KCTC 2396, complete genomepredicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain3e-0756.6
NC_017192:1799000:1813625181362518168313207Arcobacter sp. L, complete genometwo-component sensor kinase3e-0756.2
NC_008148:3024867:3040211304021130412571047Rubrobacter xylanophilus DSM 9941, complete genomeTwin-arginine translocation pathway signal3e-0756.2
NC_009515:1481051:149339314933931494343951Methanobrevibacter smithii ATCC 35061, complete genomenitrate/sulfonate/bicarbonate ABC transporter, substrate-binding component, TauA4e-0755.8
NC_009663:851143:8714898714898737562268Sulfurovum sp. NBC37-1, complete genomesignal transduction response regulator7e-0755.1
NC_006138:1571878:1571045157104515720461002Desulfotalea psychrophila LSv54, complete genomehypothetical protein1e-0654.7
NC_021182:4186515:4198028419802841990291002Clostridium pasteurianum BC1, complete genomeABC transporter, substrate-binding protein, aliphatic sulfonates family1e-0654.3
NC_014034:1507047:151051115105111511500990Rhodobacter capsulatus SB1003 chromosome, complete genomeABC transporter substrate-binding protein1e-0653.9
NC_015565:1163148:1165148116514811661881041Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completealiphatic sulfonates family ABC transporter periplasmic ligand-binding protein2e-0653.9
NC_014829:1475000:1480232148023214812601029Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeNMT1/THI5 like domain protein2e-0653.9
NC_016628:537137:570496570496571449954Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceABC transporter substrate-binding protein3e-0652.8
NC_015276:1531159:1537840153784015388501011Marinomonas mediterranea MMB-1 chromosome, complete genomeNMT1/THI5-like domain-containing protein5e-0652.4
NC_020908:1920169:194223819422381943173936Octadecabacter arcticus 238, complete genomeNMT1/Thi5 family protein5e-0652
NC_014100:1144463:1144463114446311454641002Caulobacter segnis ATCC 21756 chromosome, complete genomeNMT1/THI5 like domain-containing protein6e-0652
NC_014147:1200984:120563112056311206614984Moraxella catarrhalis RH4 chromosome, complete genomeABC transporter substrate binding protein7e-0651.6