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Query: NC_010572:1081236:1101655 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 1101655, End: 1102539, Length: 885

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013730:3208571:321303832130383213889852Spirosoma linguale DSM 74, complete genomeXylose isomerase domain protein TIM barrel3e-25115
NC_014391:3445672:344920934492093450150942Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeXylose isomerase domain-containing protein TIM barrel2e-24113
NC_010572:1293786:1301886130188613029681083Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein1e-22107
NC_018750:6950695:6966215696621569672761062Streptomyces venezuelae ATCC 10712, complete genomeXylose isomerase domain protein TIM barrel1e-22106
NC_021177:7159654:7172383717238371734591077Streptomyces fulvissimus DSM 40593, complete genomeXylose isomerase domain-containing protein TIM barrel1e-21103
NC_015947:1142206:116136911613691162232864Burkholderia sp. JV3 chromosome, complete genomexylose isomerase domain-containing protein1e-21103
NC_014500:3519722:351972235197223520576855Dickeya dadantii 3937 chromosome, complete genomeSugar phosphate isomerase/epimerase2e-21103
NC_011071:1178423:119794711979471198810864Stenotrophomonas maltophilia R551-3, complete genomeXylose isomerase domain protein TIM barrel2e-2099.4
NC_014934:244587:2670992670992684031305Cellulophaga algicola DSM 14237 chromosome, complete genomexylose isomerase domain-containing protein tim barrel8e-1891.3
NC_009523:5522447:552244755224475523199753Roseiflexus sp. RS-1 chromosome, complete genomexylose isomerase domain-containing protein6e-1788.2
NC_012914:970000:989972989972990841870Paenibacillus sp. JDR-2, complete genomeXylose isomerase domain protein TIM barrel2e-1583.6
NC_013171:1731491:173537017353701736224855Anaerococcus prevotii DSM 20548, complete genomeXylose isomerase domain protein TIM barrel7e-1271.2
NC_015577:1462874:147358114735811474396816Treponema azotonutricium ZAS-9 chromosome, complete genomesugar phosphate isomerase/epimerase1e-1170.9
NC_010997:830500:842753842753843382630Rhizobium etli CIAT 652 plasmid pC, complete sequenceputative xylose isomerase domain protein1e-1170.9
NC_015577:1462874:147277014727701473558789Treponema azotonutricium ZAS-9 chromosome, complete genomeputative xylose isomerase domain-containing protein2e-1170.1
NC_014732:141000:159300159300160025726Halogeometricum borinquense DSM 11551 plasmid pHBOR04, completesugar phosphate isomerase/epimerase3e-1066.2
NC_009480:31412:400544005440860807Clavibacter michiganensis subsp. michiganensis NCPPB 382, completeputative sugar phosphate isomerase/epimerase4e-1065.5
NC_014650:2143033:214490021449002145835936Geobacillus sp. Y4.1MC1 chromosome, complete genomemyo-inosose-2 dehydratase6e-0961.6
NC_016633:3402242:340980734098073410700894Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomesugar phosphate isomerase/epimerase5e-0858.5