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Query: NC_010572:1081236:1087356 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Start: 1087356, End: 1088339, Length: 984

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013595:5333000:535132253513225352200879Streptosporangium roseum DSM 43021, complete genomehypothetical protein4e-21102
NC_013093:2633000:267362326736232674456834Actinosynnema mirum DSM 43827, complete genomeUspA domain protein1e-1480.5
NC_015683:2469481:247840524784052479334930Corynebacterium ulcerans BR-AD22 chromosome, complete genomehypothetical protein6e-1478.6
NC_013595:5333000:534234653423465343215870Streptosporangium roseum DSM 43021, complete genomeUspA domain-containing protein9e-1477.8
NC_013595:5333000:534931153493115350168858Streptosporangium roseum DSM 43021, complete genomeuniversal stress protein1e-1377.8
NC_004369:2968251:297403429740342974990957Corynebacterium efficiens YS-314, complete genomehypothetical protein4e-1375.9
NC_015673:593982:612517612517613416900Corynebacterium resistens DSM 45100 chromosome, complete genomeuniversal stress protein8e-1374.7
NC_013595:5333000:535025553502555351106852Streptosporangium roseum DSM 43021, complete genomehypothetical protein1e-1170.5
NC_014211:439611:441802441802442710909Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 plasmidUspA domain protein8e-1064.7
NC_013595:5333000:534823653482365349114879Streptosporangium roseum DSM 43021, complete genomehypothetical protein2e-0963.5
NC_013093:2132284:214743121474312148255825Actinosynnema mirum DSM 43827, complete genomeUspA domain protein3e-0962.8
NC_009953:2867864:288320428832042884094891Salinispora arenicola CNS-205 chromosome, complete genomeUspA domain-containing protein4e-0962.4
NC_008541:1931266:194725319472531947687435Arthrobacter sp. FB24 chromosome 1, complete sequenceUspA domain protein1e-0757.4
NC_014151:1373937:138687813868781387762885Cellulomonas flavigena DSM 20109 chromosome, complete genomeUspA domain protein5e-0755.8
NC_009380:2664419:268117326811732682054882Salinispora tropica CNB-440 chromosome, complete genomeUspA domain-containing protein3e-0653.1
NC_008697:202000:202379202379203209831Nocardioides sp. JS614 plasmid pNOCA01, complete sequenceUspA domain protein4e-0652.4