Pre_GI: BLASTP Hits

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Query: NC_010501:908000:908004 Pseudomonas putida W619, complete genome

Start: 908004, End: 908786, Length: 783

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida is a common endophytic and rhizosphere bacterium. Pseudomonas putida W619 was isolated from the Black Cottonwood tree and is closely related to other endophytic and rhizosphere strains of Pseudomonas putida. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020209:397376:398832398832399611780Pseudomonas poae RE*1-1-14, complete genomeputative regulatory protein5e-116417
NC_006513:1949751:196276819627681963598831Azoarcus sp. EbN1, complete genometranscriptional regulatory protein7e-41167
NC_015381:4070968:409213940921394092969831Burkholderia gladioli BSR3 chromosome 1, complete sequenceIclR family transcriptional regulator9e-38157
NC_007348:2011957:203441720344172035232816Ralstonia eutropha JMP134 chromosome 2, complete sequenceregulatory protein, IclR2e-37156
NC_007650:832507:851070851070851981912Burkholderia thailandensis E264 chromosome II, complete sequencetranscriptional regulator, IclR family, putative8e-32137
NC_010524:4788753:480841648084164809255840Leptothrix cholodnii SP-6, complete genometranscriptional regulator, IclR family5e-31134
NC_011666:1572487:157832815783281579116789Methylocella silvestris BL2, complete genometranscriptional regulator, IclR family1e-28126
NC_014098:2332938:235415623541562354929774Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, IclR family3e-24112
NC_015563:4024450:404624740462474047149903Delftia sp. Cs1-4 chromosome, complete genomeIclR family transcriptional regulator1e-20100
NC_010002:3465509:346550934655093466300792Delftia acidovorans SPH-1, complete genometranscriptional regulator, IclR family5e-2098.2
NC_009524:861500:877225877225878058834Psychrobacter sp. PRwf-1 chromosome, complete genomeregulatory protein IclR3e-1995.5
NC_015949:428923:438325438325439119795Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeIclR family transcriptional regulator1e-1893.2
NC_015949:47414:557195571956513795Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeIclR family transcriptional regulator1e-1893.2
NC_014657:2236193:225991522599152260712798Caldicellulosiruptor owensensis OL chromosome, complete genometranscriptional regulator, iclr family4e-1892
NC_014392:2311243:231796223179622318795834Caldicellulosiruptor obsidiansis OB47 chromosome, complete genometranscriptional regulator, IclR family4e-1892
NC_014721:2043910:204995520499552050749795Caldicellulosiruptor kristjanssonii 177R1B chromosome, completetranscriptional regulator, iclr family7e-1891.3
NC_019978:2532640:254798025479802548762783Halobacteroides halobius DSM 5150, complete genometranscriptional regulator1e-1686.7
NC_015589:2447132:244890124489012449674774Desulfotomaculum ruminis DSM 2154 chromosome, complete genometranscriptional regulator IclR2e-1583.2
NC_007644:416000:418409418409419215807Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, IclR family2e-1583.2
NC_014652:163347:170037170037170810774Caldicellulosiruptor hydrothermalis 108 chromosome, completetranscriptional regulator, iclr family5e-1581.6
NC_015844:5375784:537986353798635380654792Zobellia galactanivorans, complete genomeIclR-type transcriptional regulator5e-1581.6
NC_015844:5375784:538906253890625389859798Zobellia galactanivorans, complete genomeIclR-type transcriptional regulator2e-1479.7
NC_019962:1750497:186400218640021864754753Natrinema pellirubrum DSM 15624, complete genometranscriptional regulator8e-1477.8
NC_005139:518760:535254535254536063810Vibrio vulnificus YJ016 chromosome I, complete sequencetranscriptional regulator2e-1376.6
NC_016943:1560000:156831215683121569094783Blastococcus saxobsidens DD2, complete genomeIclR family transcriptional regulator3e-1375.9
NC_009655:1626466:163827816382781639075798Actinobacillus succinogenes 130Z chromosome, complete genometranscriptional regulator IclR4e-1375.1
NC_015565:2027279:204943020494302050236807Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeIclR family transcriptional regulator5e-1374.7
NC_016641:2476634:247877124787712479514744Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional regulator6e-1374.7
NC_020908:823589:840435840435841193759Octadecabacter arcticus 238, complete genomeIclR family transcriptional regulator1e-1273.6
NC_012912:2216749:223158522315852232376792Dickeya zeae Ech1591, complete genometranscriptional regulator, IclR family1e-1273.6
NC_004460:973738:987891987891988673783Vibrio vulnificus CMCP6 chromosome II, complete sequenceTranscriptional regulator1e-1273.6
NC_014836:312353:329289329289330101813Desulfurispirillum indicum S5 chromosome, complete genomeregulatory protein IclR3e-1272
NC_014500:2589089:259686025968602597651792Dickeya dadantii 3937 chromosome, complete genomeDNA-binding transcriptional regulatory protein KdgR4e-1272
NC_012880:2425330:243403424340342434825792Dickeya dadantii Ech703, complete genometranscriptional regulator, IclR family6e-1271.2
CP002797:4603787:461008346100834610847765Escherichia coli NA114, complete genomePutative transcriptional regulator, IclR family7e-1271.2
NC_011001:163813:181278181278182174897Burkholderia cenocepacia J2315 chromosome 2, complete sequencetranscriptional regulator KdgR7e-1271.2
NC_008148:792610:805439805439806221783Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, IclR family7e-1271.2
NC_020911:3159290:317696631769663177724759Octadecabacter antarcticus 307, complete genomeIclR family transcriptional regulator8e-1270.9
NC_008593:640000:648290648290649051762Clostridium novyi NT, complete genometranscription regulator (IclR family) BH21371e-1170.5
NC_015732:684000:686748686748687509762Spirochaeta caldaria DSM 7334 chromosome, complete genomeIclR family transcriptional regulator7e-1167.8
NC_016584:593954:606783606783607556774Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator7e-1167.8
NC_013929:1670402:167536316753631676148786Streptomyces scabiei 87.22 chromosome, complete genometranscriptional regulator1e-1067
NC_015573:813000:839785839785840549765Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeIclR family transcriptional regulator2e-1066.6
NC_010997:830500:836841836841837644804Rhizobium etli CIAT 652 plasmid pC, complete sequenceputative transcriptional regulator protein, IclR family4e-1065.5
NC_014623:1633889:163496616349661635784819Stigmatella aurantiaca DW4/3-1 chromosome, complete genometranscriptional regulator3e-1065.5
NC_007951:3655088:366880636688063669132327Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, IclR family7e-1064.3
NC_014532:2298628:230572923057292306538810Halomonas elongata DSM 2581, complete genometranscriptional regulator KdgR7e-1064.3
NC_014641:20103:433264332643643318Achromobacter xylosoxidans A8 plasmid pA81, complete sequenceIclR helix-turn-helix domain-containing protein 78e-1064.3
NC_012691:1250385:127547512754751276257783Tolumonas auensis DSM 9187, complete genometranscriptional regulator, IclR family1e-0963.9
NC_007503:1111457:113341811334181134203786Carboxydothermus hydrogenoformans Z-2901, complete genometranscriptional regulator, IclR family1e-0963.5
NC_007953:938346:955359955359956207849Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, IclR family1e-0963.5
NC_007644:362000:379800379800380564765Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, IclR family1e-0963.5
NC_020302:146807:162161162161162958798Corynebacterium halotolerans YIM 70093 = DSM 44683, completeIclR family transcriptional regulator2e-0963.2
NC_014532:3479674:347967434796743480453780Halomonas elongata DSM 2581, complete genometranscriptional regulator, IclR family2e-0963.2
NC_013757:3012130:301834030183403019140801Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, IclR family2e-0963.2
NC_010552:2454776:245477624547762455564789Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, IclR family2e-0962.8
NC_002678:5060670:507867250786725079481810Mesorhizobium loti MAFF303099, complete genomehypothetical protein4e-0962
NC_020134:845164:851861851861852637777Clostridium stercorarium subsp. stercorarium DSM 8532, completepectin degradation repressor protein KdgR5e-0961.6
NC_007963:317291:335808335808336599792Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, IclR family7e-0961.2
NC_013159:2913927:292611229261122926918807Saccharomonospora viridis DSM 43017, complete genometranscriptional regulator7e-0961.2
NC_009792:4693152:471779447177944718549756Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein9e-0960.8
NC_008596:4152916:416604641660464166819774Mycobacterium smegmatis str. MC2 155, complete genomeputative IclR family protein transcriptional regulator1e-0860.5
NC_012521:148886:165731165731166522792Rhodococcus opacus B4 plasmid pROB02, complete sequenceputative IclR family transcriptional regulator1e-0860.1
NC_014931:5573942:559204755920475592841795Variovorax paradoxus EPS chromosome, complete genometranscriptional regulator, IclR family1e-0860.1
NC_011830:4645453:465649246564924657265774Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, IclR family2e-0859.7
NC_015589:2281054:228220522822052283017813Desulfotomaculum ruminis DSM 2154 chromosome, complete genometranscriptional regulator IclR2e-0859.7
NC_009483:1636189:165581316558131656577765Geobacter uraniireducens Rf4 chromosome, complete genomeregulatory protein IclR2e-0859.3
NC_009512:5920960:593641859364185937254837Pseudomonas putida F1, complete genomeregulatory protein, IclR5e-0858.5
NC_016514:506611:509638509638510396759Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YagI5e-0858.5
NC_018000:1852691:187154618715461872355810Sinorhizobium fredii USDA 257 chromosome, complete genomeacetate operon repressor5e-0858.2
NC_007963:317291:334985334985335767783Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, IclR family6e-0858.2
NC_009485:1222697:124249912424991243314816Bradyrhizobium sp. BTAi1 chromosome, complete genomeIclR family transcriptional regulator1e-0757
NC_014814:132404:141615141615142415801Mycobacterium sp. Spyr1 chromosome, complete genomeTranscriptional regulator PhtR2e-0756.6
NC_008146:1748026:175758017575801758473894Mycobacterium sp. MCS, complete genometranscriptional regulator, IclR family1e-0756.6
NC_009077:1687304:169721316972131698106894Mycobacterium sp. JLS, complete genomeregulatory proteins, IclR1e-0756.6
NC_008705:1752180:176173417617341762627894Mycobacterium sp. KMS, complete genomeregulatory proteins, IclR1e-0756.6
NC_004337:3590323:372325937232593724107849Shigella flexneri 2a str. 301, complete genomeputative regulator2e-0756.2
NC_006510:1995916:201138620113862012162777Geobacillus kaustophilus HTA426, complete genometranscriptional regulator2e-0756.2
NC_014550:1581812:163452816345281635253726Arthrobacter arilaitensis Re117, complete genomeIclR family transcriptional regulator3e-0755.8
NC_014121:677799:677799677799678557759Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completephage predicted DNA-binding transcriptional regulator4e-0755.5
NC_009338:686932:705973705973706773801Mycobacterium gilvum PYR-GCK chromosome, complete genomeregulatory protein IclR4e-0755.5
NC_015944:10500:256442564426579936Haloarcula hispanica ATCC 33960 plasmid pHH400, complete sequencetranscription regulator3e-0755.5
NC_008010:105665:110677110677111552876Deinococcus geothermalis DSM 11300 plasmid 1, complete sequencetranscriptional regulator, IclR family3e-0755.5
NC_013510:5394432:540096854009685401714747Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, IclR family3e-0755.5
NC_007951:1928906:194549319454931946338846Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, IclR family5e-0755.1
NC_014206:1618988:162671116267111627487777Geobacillus sp. C56-T3 chromosome, complete genomeIclR family transcriptional regulator5e-0755.1
NC_015379:2505233:251805125180512518803753Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative transcription factor, IclR family7e-0754.7
NC_016943:4194002:419849841984984199286789Blastococcus saxobsidens DD2, complete genomeputative HTH-type transcriptional repressor allR1e-0653.9
NC_018691:198909:215686215686216465780Alcanivorax dieselolei B5 chromosome, complete genomeBeta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family1e-0653.9
AC_000091:273325:287628287628288386759Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator1e-0653.9
NC_000913:272071:287628287628288386759Escherichia coli K12, complete genomeCP4-6 prophage; predicted DNA-binding transcriptional regulator1e-0653.9
NC_008010:105665:109770109770110609840Deinococcus geothermalis DSM 11300 plasmid 1, complete sequencetranscriptional regulator, IclR family1e-0653.9
NC_019673:8114376:812535081253508126270921Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, IclR family1e-0653.5
NC_009468:38112:599365993660745810Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequenceregulatory protein, IclR2e-0653.5
NC_014039:2320307:233734123373412338105765Propionibacterium acnes SK137 chromosome, complete genometranscriptional regulator, IclR family, C-terminal domain protein2e-0653.1
NC_006085:2384892:240191124019112402675765Propionibacterium acnes KPA171202, complete genometranscriptional regulator (IclR family)2e-0653.1
NC_016511:2321999:234027323402732341037765Propionibacterium acnes TypeIA2 P.acn31 chromosome, completeIclR family transcriptional regulator2e-0653.1
NC_016512:2322598:233961523396152340379765Propionibacterium acnes TypeIA2 P.acn17 chromosome, completeIclR family transcriptional regulator2e-0653.1
NC_016516:2314115:233113123311312331895765Propionibacterium acnes TypeIA2 P.acn33 chromosome, completeIclR family transcriptional regulator2e-0653.1
NC_009338:603663:622995622995623876882Mycobacterium gilvum PYR-GCK chromosome, complete genomeregulatory protein IclR3e-0652.8
NC_016048:308342:343421343421344185765Oscillibacter valericigenes Sjm18-20, complete genomeputative IclR family transcriptional regulator2e-0652.8
NC_014666:1601972:160197216019721602739768Frankia sp. EuI1c chromosome, complete genometranscriptional regulator, IclR family2e-0652.8
NC_006395:161455:169885169885170700816Haloarcula marismortui ATCC 43049 plasmid pNG700, completetranscription regulator2e-0652.8
NC_015577:2508027:253114025311402531940801Treponema azotonutricium ZAS-9 chromosome, complete genometranscriptional regulator3e-0652.4
NC_015724:166246:186530186530187378849Cupriavidus necator N-1 plasmid BB2p, complete sequencetranscriptional regulator IclR family3e-0652.4
NC_012669:4118230:412893741289374129710774Beutenbergia cavernae DSM 12333, complete genometranscriptional regulator, IclR family4e-0652
NC_016642:1990684:2006015200601520077391725Pseudovibrio sp. FO-BEG1 chromosome, complete genomeSMP-30/Gluconolaconase/LRE-like region4e-0652
NC_016604:3137694:314993631499363150736801Mycobacterium rhodesiae NBB3 chromosome, complete genometranscriptional regulator4e-0652
NC_017955:3057592:306076030607603061566807Modestobacter marinus, complete genomeIclR family transcriptional regulator6e-0651.6
NC_008712:250240:267556267556268293738Arthrobacter aurescens TC1 plasmid TC1, complete sequencePcaR transcriptional regulator, IclR family5e-0651.6
NC_010718:2860096:287722228772222877980759Natranaerobius thermophilus JW/NM-WN-LF, complete genometranscriptional regulator, IclR family7e-0651.2
NC_007952:3283394:331593333159333316799867Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, IclR family7e-0651.2
NC_008268:3162824:3164996316499631666031608Rhodococcus sp. RHA1, complete genomeprobable transcriptional regulator, IclR family7e-0651.2
NC_008726:494769:503943503943504749807Mycobacterium vanbaalenii PYR-1, complete genomeregulatory proteins, IclR8e-0651.2
NC_014974:1076565:109702010970201097802783Thermus scotoductus SA-01 chromosome, complete genomeIclR family transcriptional regulator8e-0650.8