Pre_GI: BLASTP Hits

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Query: NC_010501:3987615:4012794 Pseudomonas putida W619, complete genome

Start: 4012794, End: 4013453, Length: 660

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida is a common endophytic and rhizosphere bacterium. Pseudomonas putida W619 was isolated from the Black Cottonwood tree and is closely related to other endophytic and rhizosphere strains of Pseudomonas putida. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008027:1847040:184704018470401847699660Pseudomonas entomophila L48, complete genometranscriptional regulator (GntR-family)5e-111400
NC_020829:3434736:345600434560043456663660Pseudomonas denitrificans ATCC 13867, complete genomeGntR family transcriptional regulator3e-75281
NC_018691:3525430:357746635774663578158693Alcanivorax dieselolei B5 chromosome, complete genomeTranscriptional regulator, GntR family protein4e-39161
NC_008260:125500:129582129582130286705Alcanivorax borkumensis SK2, complete genometranscriptional regulator, GntR family1e-23109
NC_010002:3357752:337233533723353373021687Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family3e-1271.6
NC_013446:2655955:266091026609102661545636Comamonas testosteroni CNB-2, complete genometranscriptional regulator, GntR family6e-1270.9
NC_015723:1047418:105977810597781060590813Cupriavidus necator N-1 chromosome 2, complete sequenceGntR family transcriptional regulator4e-1168.2
NC_015458:3390674:340150434015043402238735Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator4e-1168.2
NC_013939:1625491:163746116374611638132672Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator4e-1168.2
NC_016147:2964178:297771029777102978438729Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeGntR family transcriptional regulator5e-1167.8
NC_020911:3046916:305943830594383060121684Octadecabacter antarcticus 307, complete genomeGntR family transcriptional regulator2e-1065.9
NC_015977:2565922:256592225659222566599678Roseburia hominis A2-183 chromosome, complete genomeGntR domain containing protein2e-1065.9
NC_015458:1692401:169240116924011693138738Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator3e-1065.1
NC_014910:3458475:348208934820893482757669Alicycliphilus denitrificans BC chromosome, complete genomegntr domain protein3e-1065.1
NC_014931:3642779:365811536581153658783669Variovorax paradoxus EPS chromosome, complete genometranscriptional regulator, GntR family6e-1064.3
NC_008699:1247423:124742312474231248148726Nocardioides sp. JS614, complete genomeGntR domain protein8e-1063.9
NC_009922:315870:338735338735339421687Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, GntR family9e-1063.5
NC_013093:2633000:263436726343672635044678Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, GntR family1e-0963.2
NC_004463:2262467:226446822644682265103636Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulatory protein2e-0962.8
NC_009937:412302:415716415716416384669Azorhizobium caulinodans ORS 571, complete genomeGntR family transcriptional regulator1e-0962.8
NC_010002:3357752:335915233591523359841690Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family6e-0960.8
NC_014210:5683616:569274356927435693420678Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, GntR family8e-0960.5
NC_014618:2423661:244155524415552442241687Enterobacter cloacae SCF1 chromosome, complete genomeGntR family transcriptional regulator8e-0960.5
AC_000091:1521976:152197615219761522641666Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator7e-0960.5
NC_010473:1607646:160888116088811609546666Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator7e-0960.5
NC_000913:1517051:151828615182861518951666Escherichia coli K12, complete genomepredicted DNA-binding transcriptional regulator7e-0960.5
NC_012759:1409086:141034514103451411010666Escherichia coli BW2952 chromosome, complete genomeputative DNA-binding transcriptional regulator7e-0960.5
NC_016803:3502749:351406835140683514757690Desulfovibrio desulfuricans ND132 chromosome, complete genomeGntR family transcriptional regulator1e-0859.7
NC_014840:205723:266022266022266699678Pantoea sp. At-9b plasmid pPAT9B03, complete sequencetranscriptional regulator, GntR family1e-0859.7
NC_009328:1867971:186797118679711868669699Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeregulatory protein2e-0859.3
NC_013939:1625491:163812216381221638790669Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator3e-0858.9
NC_012522:3038890:304323930432393043943705Rhodococcus opacus B4, complete genomeputative GntR family transcriptional regulator3e-0858.5
NC_008209:1385094:140394714039471404594648Roseobacter denitrificans OCh 114, complete genomeGntR-family transcription regulator, putative3e-0858.5
NC_014915:1880748:188433518843351885033699Geobacillus sp. Y412MC52 chromosome, complete genometranscriptional regulator, GntR family6e-0857.8
NC_013411:2739989:274439727443972745095699Geobacillus sp. Y412MC61, complete genometranscriptional regulator, GntR family6e-0857.8
NC_015727:1076927:109922410992241099961738Cupriavidus necator N-1 plasmid BB1p, complete sequenceGntR family transcriptional regulator8e-0857.4
NC_008148:2231045:227183422718342272532699Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, GntR family7e-0857.4
UCMB5137:3660165:368860236886023689270669Bacillus atrophaeus UCMB-5137putative transcriptional regulator7e-0857.4
NC_020210:1908000:192856519285651929263699Geobacillus sp. GHH01, complete genomeHTH-type transcriptional regulator6e-0857.4
NC_014206:1745203:174693817469381747636699Geobacillus sp. C56-T3 chromosome, complete genomeGntR family transcriptional regulator6e-0857.4
NC_013850:2846069:287440328744032875089687Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, GntR family9e-0857
NC_000913:1625500:162637616263761627062687Escherichia coli K12, complete genomepredicted DNA-binding transcriptional regulator1e-0756.6
CU928160:1625535:164533116453311646017687Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator1e-0756.6
NC_010473:1712984:171600117160011716687687Escherichia coli str. K-12 substr. DH10B, complete genomepredicted DNA-binding transcriptional regulator1e-0756.6
AC_000091:1627049:163006616300661630752687Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator1e-0756.6
NC_008563:1651270:167156316715631672249687Escherichia coli APEC O1, complete genomehypothetical protein1e-0756.6
CP002185:1727493:174728917472891747975687Escherichia coli W, complete genomepredicted DNA-binding transcriptional regulator1e-0756.6
NC_011415:1715644:173544017354401736126687Escherichia coli SE11 chromosome, complete genomeputative transcriptional repressor1e-0756.6
NC_011741:1625535:164533116453311646017687Escherichia coli IAI1 chromosome, complete genomeputative DNA-binding transcriptional regulator1e-0756.6
NC_011283:2836000:291203329120332912719687Klebsiella pneumoniae 342 chromosome, complete genomeGntR family transcriptional regulator1e-0756.6
NC_003911:1791878:184090118409011841641741Silicibacter pomeroyi DSS-3, complete genometranscriptional regulator, GntR family1e-0756.6
NC_012967:1593101:159611815961181596804687Escherichia coli B str. REL606 chromosome, complete genomeputative DNA-binding transcriptional regulator1e-0756.6
NC_012947:2189533:220404922040492204735687Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeGntR family transcriptional regulator1e-0756.6
NC_012759:1517500:151843515184351519121687Escherichia coli BW2952 chromosome, complete genomeputative DNA-binding transcriptional regulator1e-0756.6
NC_016894:3329562:333153633315363332213678Acetobacterium woodii DSM 1030 chromosome, complete genomeGntR family transcriptional regulator2e-0756.2
NC_014206:2971304:298470229847022985352651Geobacillus sp. C56-T3 chromosome, complete genomeGntR family transcriptional regulator2e-0756.2
NC_012108:5273289:528731952873195287996678Desulfobacterium autotrophicum HRM2, complete genomeputative transcriptional regulator2e-0756.2
NC_016906:3286384:328959032895903290342753Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative GntR family transcriptional regulator2e-0755.8
NC_004578:6089958:610844861084486109113666Pseudomonas syringae pv. tomato str. DC3000, complete genometranscriptional regulator, GntR family2e-0755.8
NC_016514:2079975:207997520799752080661687Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YdfH2e-0755.5
NC_014963:3175912:317591231759123176580669Terriglobus saanensis SP1PR4 chromosome, complete genomeGntR family transcriptional regulator3e-0755.5
NC_014011:527681:541220541220541882663Aminobacterium colombiense DSM 12261 chromosome, complete genometranscriptional regulator, GntR family3e-0755.1
NC_016593:762216:786841786841787500660Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completetranscriptional regulator, GntR8e-0753.9
NC_020210:661236:668499668499669158660Geobacillus sp. GHH01, complete genomeHTH-type transcriptional regulator8e-0753.9
NC_009142:5647737:565529756552975655986690Saccharopolyspora erythraea NRRL 2338, complete genomepossible transcriptional regulator, GntR family7e-0753.9
NC_014098:1258559:126150612615061262153648Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, GntR family7e-0753.9
NC_006087:28490:491104911049751642Leifsonia xyli subsp. xyli str. CTCB07, complete genometranscriptional regulator, GntR family1e-0653.5
NC_013173:2261396:227212122721212272783663Desulfomicrobium baculatum DSM 4028, complete genometranscriptional regulator, GntR family1e-0653.1
NC_008258:1784637:180366018036601804325666Shigella flexneri 5 str. 8401, complete genomehypothetical protein1e-0653.1
NC_017328:1835108:185687918568791857601723Shigella flexneri 2002017 chromosome, complete genomeputative HTH-type transcriptional regulator yncC2e-0652.8
NC_004337:1783645:180433618043361805058723Shigella flexneri 2a str. 301, complete genomehypothetical protein2e-0652.8
NC_007963:3553678:356654835665483567216669Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, GntR family2e-0652.8
NC_013947:1696671:171062117106211711286666Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family2e-0652.4
NC_008596:4104476:412930241293024129928627Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein2e-0652.4
NC_020272:3396800:342166934216693422334666Bacillus amyloliquefaciens IT-45, complete genomeFatty acid metabolism regulator protein3e-0652
NC_007434:2449721:247662724766272477433807Burkholderia pseudomallei 1710b chromosome I, complete sequencetranscriptional regulator, gntR family3e-0652
NC_008686:1383891:140152714015271402195669Paracoccus denitrificans PD1222 chromosome 1, complete sequencetranscriptional regulator, GntR family3e-0652
NC_017271:4193000:422159942215994222318720Xanthomonas campestris pv. raphani 756C chromosome, completetranscriptional regulator MdcY family4e-0651.6
NC_020209:3874844:390377339037733904372600Pseudomonas poae RE*1-1-14, complete genomeGntR family transcriptional regulator3e-0651.6
NC_007974:785216:801188801188802060873Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, GntR family5e-0651.2
NC_008254:611437:6283116283116295011191Mesorhizobium sp. BNC1, complete genometranscriptional regulator, GntR family5e-0651.2
NC_006350:1938631:197258619725861973254669Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative GntR-family transcriptional regulator6e-0650.8
NC_009720:583060:586317586317586994678Xanthobacter autotrophicus Py2, complete genomeGntR family transcriptional regulator7e-0650.8
NC_020829:809457:813097813097813771675Pseudomonas denitrificans ATCC 13867, complete genometranscriptional regulator7e-0650.8
NC_017195:517344:536111536111536803693Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completetranscriptional regulator, GntR family7e-0650.8
NC_012856:1:147231472315487765Ralstonia pickettii 12D chromosome 1, complete genomeGntR domain protein8e-0650.4
NC_004193:2921103:293098429309842931643660Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator8e-0650.4