Pre_GI: BLASTP Hits

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Query: NC_010501:3987615:3992256 Pseudomonas putida W619, complete genome

Start: 3992256, End: 3992669, Length: 414

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida is a common endophytic and rhizosphere bacterium. Pseudomonas putida W619 was isolated from the Black Cottonwood tree and is closely related to other endophytic and rhizosphere strains of Pseudomonas putida. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015733:4130000:413477841347784135200423Pseudomonas putida S16 chromosome, complete genomeMerR family transcriptional regulator3e-57219
NC_008027:1847040:186647118664711866866396Pseudomonas entomophila L48, complete genometranscriptional regulator1e-51201
NC_013166:82986:944679446794919453Kangiella koreensis DSM 16069, complete genometranscriptional regulator, MerR family8e-35145
NC_008702:2892605:289957428995742900011438Azoarcus sp. BH72, complete genomeprobable redox-sensitive transcriptional activator6e-33139
NC_012724:1308000:132249213224921322923432Burkholderia glumae BGR1 chromosome 1, complete genomeTranscriptional regulator, MerR family protein2e-32137
NC_015731:1578106:160221816022181602658441Nitrosomonas sp. Is79A3 chromosome, complete genomeMarR family transcriptional regulator2e-31134
NC_014623:9089998:909611190961119096548438Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeMerR family transcriptional regulator6e-31132
NC_010410:3719599:372359937235993724003405Acinetobacter baumannii AYE, complete genomeputative transcriptional regulator (MerR family)4e-29126
NC_010611:208268:225980225980226384405Acinetobacter baumannii ACICU, complete genomepredicted transcriptional regulator3e-28124
NC_016514:1183356:119649111964911196919429Enterobacter cloacae EcWSU1 chromosome, complete genomemerR family transcriptional Regulator2e-25114
NC_009425:63709:883968839688821426Enterobacter sp. 638 plasmid pENTE01, complete sequenceMerR family transcriptional regulator2e-23107
NC_016109:4088259:410598841059884106383396Kitasatospora setae KM-6054, complete genomeputative MerR family transcriptional regulator3e-1167.4
NC_013792:109203:115508115508115993486Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequencemercuric resistance operon regulatory protein MerR1e-0962
NC_008782:2857899:286344128634412863956516Acidovorax sp. JS42, complete genomeputative transcriptional regulator, MerR family3e-0960.5
NC_015422:2858228:286535728653572865800444Alicycliphilus denitrificans K601 chromosome, complete genomeMerR family transcriptional regulator3e-0960.5
NC_011420:69843:929229292293323402Rhodospirillum centenum SW, complete genomeHTH-type transcriptional regulator HmrR4e-0857
NC_008702:1432952:147196814719681472363396Azoarcus sp. BH72, complete genomeputative regulatory protein4e-0856.6
NC_016616:1091606:109800110980011098429429Dechlorosoma suillum PS chromosome, complete genomeCu(I)-responsive transcriptional regulator8e-0855.8
NC_010067:3310336:331693133169313317389459Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein8e-0855.8
NC_010125:74904:971789717897711534Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transcriptional regulator, MerR family9e-0855.5
NC_011894:4911500:492472249247224925156435Methylobacterium nodulans ORS 2060, complete genometranscriptional regulator, MerR family2e-0754.7
NC_019673:7598026:761095576109557611416462Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, MerR family2e-0754.3
NC_017904:3084872:309662730966273097076450Mycobacterium sp. MOTT36Y chromosome, complete genometranscriptional regulator3e-0753.9
NC_008740:257434:280490280490280915426Marinobacter aquaeolei VT8, complete genomeputative transcriptional regulator, MerR family3e-0753.9
NC_004461:73390:832838328383690408Staphylococcus epidermidis ATCC 12228, complete genomehypothetical protein3e-0753.9
NC_012483:1408500:144328314432831443693411Acidobacterium capsulatum ATCC 51196, complete genometranscriptional regulator, MerR family5e-0753.1
NC_011094:4361238:439494043949404395398459Salmonella enterica subsp. enterica serovar Schwarzengrund strredox-sensitive transcriptional activator SoxR6e-0753.1
NC_006905:4405301:443899744389974439455459Salmonella enterica subsp. enterica serovar Choleraesuis strredox-sensing transcriptional activator SoxR, contains iron-sulfur center for redox-sensing (MerR family)6e-0753.1
NC_010172:480000:522568522568523185618Methylobacterium extorquens PA1, complete genomeregulatory protein MerR8e-0752.4
NC_002947:4362271:436476643647664365137372Pseudomonas putida KT2440, complete genometranscriptional regulator, MerR family1e-0652
NC_009040:43791:599605996060382423Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, completeputative transcriptional regulator, MerR family1e-0652
NC_009439:918534:924888924888925319432Pseudomonas mendocina ymp, complete genomeMerR family transcriptional regulator1e-0651.6
NC_009434:3611738:370624537062453706643399Pseudomonas stutzeri A1501, complete genomeMerR family transcriptional regulator2e-0651.2
NC_009656:115390:122118122118122516399Pseudomonas aeruginosa PA7 chromosome, complete genomeHg(II)-responsive transcriptional regulator2e-0651.2
NC_015684:2000771:200669720066972007122426Oligotropha carboxidovorans OM5 chromosome, complete genomeMerR family transcriptional regulator2e-0651.2
NC_020181:3585898:360470636047063605164459Enterobacter aerogenes EA1509E, complete genomeRedox-sensitive transcriptional activator SoxR2e-0651.2
NC_020911:3475096:347754534775453477955411Octadecabacter antarcticus 307, complete genomeputative HTH-type transcriptional regulator3e-0650.8
NC_011001:2327633:233684423368442337317474Burkholderia cenocepacia J2315 chromosome 2, complete sequenceMerR family regulatory protein3e-0650.4
NC_011662:2374955:238002023800202380475456Thauera sp. MZ1T, complete genometranscriptional regulator, MerR family4e-0650.1
NC_014550:2091797:211753021175302118036507Arthrobacter arilaitensis Re117, complete genomeputative redox-sensitive transcriptional regulator SoxR6e-0649.7
NC_015671:3093596:310524731052473105645399Cellvibrio gilvus ATCC 13127 chromosome, complete genomeMerR family transcriptional regulator6e-0649.7
NC_008347:174000:190633190633191043411Maricaulis maris MCS10, complete genomeputative transcriptional regulator, MerR family7e-0649.3
NC_009668:445134:485515485515485955441Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceMerR family transcriptional regulator7e-0649.3
NC_003296:140889:159311159311159769459Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE TRANSCRIPTION REGULATOR PROTEIN7e-0649.3
NC_016111:5369414:537814953781495378634486Streptomyces cattleya NRRL 8057, complete genomeHTH-type transcriptional activator soxR-like protein8e-0649.3
NC_014910:242845:259708259708260163456Alicycliphilus denitrificans BC chromosome, complete genomecd(ii)/pb(ii)-responsive transcriptional regulator8e-0648.9