Pre_GI: BLASTN Hits

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Query: NC_010498:3988351 Escherichia coli SMS-3-5, complete genome

Start: 3988351, End: 4018468, Length: 30118

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Escherichia coli SMS-3-5 was isolated from a toxic-metal contaminated site, Shipyard Creek, Charleston, South Carolina, USA. This strain is highly resistant to a number of antibiotics. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009801:40739684073968409617422207Escherichia coli E24377A, complete genome011540BLASTN svgBLASTP svg
AP010958:4707712*4707712472598018269Escherichia coli O103:H2 str. 12009 DNA, complete genome010250BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome09426BLASTN svgBLASTP svg
CP002516:119935*11993514694827014Escherichia coli KO11, complete genome09151BLASTN svgBLASTP svg
NC_010468:111504*11150413814926646Escherichia coli ATCC 8739, complete genome09135BLASTN svgBLASTP svg
CP002185:39645003964500398613821639Escherichia coli W, complete genome07131BLASTN svgBLASTP svg
CU928145:41319244131924415503823115Escherichia coli 55989 chromosome, complete genome07091BLASTN svgBLASTP svg
NC_011748:41319244131924415503823115Escherichia coli 55989, complete genome07091BLASTN svgBLASTP svg
NC_009800:3787320*3787320380985222533Escherichia coli HS, complete genome07061BLASTN svgBLASTP svg
NC_007606:37551553755155377834323189Shigella dysenteriae Sd197, complete genome02242BLASTN svgBLASTP svg
NC_013282:116649*11664913955822910Cronobacter turicensis, complete genome01463BLASTN svgBLASTP svg
NC_020260:38365003836500386459928100Cronobacter sakazakii Sp291, complete genome6e-128466BLASTN svgBLASTP svg
NC_009778:38320003832000386183229833Enterobacter sakazakii ATCC BAA-894, complete genome6e-128466BLASTN svgBLASTP svg
NC_015224:4473230*4473230449714523916Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,1e-55226BLASTN svgBLASTP svg
NC_013592:20591382059138209167632539Dickeya dadantii Ech586, complete genome3e-34155BLASTN svgBLASTP svg
NC_014500:26880952688095271328625192Dickeya dadantii 3937 chromosome, complete genome1e-24123BLASTN svgBLASTP svg
NC_013716:4306695*4306695439827491580Citrobacter rodentium ICC168, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_004603:37032037032039589225573Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete2e-1489.7BLASTN svgBLASTP svg
NC_013416:1748848*1748848176691818071Aggregatibacter actinomycetemcomitans D11S-1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_005773:4539751*4539751456760327853Pseudomonas syringae pv. phaseolicola 1448A, complete genome1e-1283.8BLASTN svgBLASTP svg
NC_007498:18484371848437186889420458Pelobacter carbinolicus DSM 2380, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_006513:27082132708213273362325411Azoarcus sp. EbN1, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_009832:110239*11023913543725199Serratia proteamaculans 568, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013172:783097*78309780703523939Brachybacterium faecium DSM 4810, complete genome9e-0763.9BLASTN svgBLASTP svg
CP002797:4411763*4411763444042528663Escherichia coli NA114, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_012721:770651*77065183681366163Burkholderia glumae BGR1 chromosome 2, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_002663:19880001988000201040322404Pasteurella multocida subsp. multocida str. Pm70, complete genome4e-0661.9BLASTN svgBLASTP svg