Pre_GI: BLASTN Hits

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Query: NC_010498:1659328 Escherichia coli SMS-3-5, complete genome

Start: 1659328, End: 1681492, Length: 22165

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Escherichia coli SMS-3-5 was isolated from a toxic-metal contaminated site, Shipyard Creek, Charleston, South Carolina, USA. This strain is highly resistant to a number of antibiotics. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004431:17546271754627177809923473Escherichia coli CFT073, complete genome031290BLASTN svgBLASTP svg
NC_002695:20918902091890211359921710Escherichia coli O157:H7 str. Sakai, complete genome031270BLASTN svgBLASTP svg
AP010958:17116561711656173552123866Escherichia coli O103:H2 str. 12009 DNA, complete genome031150BLASTN svgBLASTP svg
NC_009801:16787901678790170320124412Escherichia coli E24377A, complete genome030910BLASTN svgBLASTP svg
NC_007613:15330241533024155939726374Shigella boydii Sb227, complete genome029580BLASTN svgBLASTP svg
NC_011750:18495611849561187012520565Escherichia coli IAI39 chromosome, complete genome029030BLASTN svgBLASTP svg
NC_008563:16209431620943164109920157Escherichia coli APEC O1, complete genome028460BLASTN svgBLASTP svg
NC_007946:16320251632025165817126147Escherichia coli UTI89, complete genome028460BLASTN svgBLASTP svg
NC_009800:15890001589000161490825909Escherichia coli HS, complete genome028260BLASTN svgBLASTP svg
NC_011751:17703761770376179379823423Escherichia coli UMN026 chromosome, complete genome028220BLASTN svgBLASTP svg
AC_000091:15740001574000159980025801Escherichia coli W3110 DNA, complete genome028210BLASTN svgBLASTP svg
NC_010473:16610001661000168573524736Escherichia coli str. K-12 substr. DH10B, complete genome028060BLASTN svgBLASTP svg
NC_011748:16847771684777170387419098Escherichia coli 55989, complete genome028040BLASTN svgBLASTP svg
CU928145:16847771684777170387419098Escherichia coli 55989 chromosome, complete genome028040BLASTN svgBLASTP svg
NC_000913:15704311570431159611025680Escherichia coli K12, complete genome028020BLASTN svgBLASTP svg
CU928160:15793751579375160831928945Escherichia coli IAI1 chromosome, complete genome027990BLASTN svgBLASTP svg
NC_010468:23457812345781237145925679Escherichia coli ATCC 8739, complete genome027980BLASTN svgBLASTP svg
CP002185:16813271681327171027728951Escherichia coli W, complete genome027950BLASTN svgBLASTP svg
NC_008253:15348401534840155611921280Escherichia coli 536, complete genome026710BLASTN svgBLASTP svg
NC_002655:19664641966464198957123108Escherichia coli O157:H7 EDL933, complete genome018400BLASTN svgBLASTP svg
CP002516:23955782395578241927123694Escherichia coli KO11, complete genome018270BLASTN svgBLASTP svg
NC_007384:16968311696831171856121731Shigella sonnei Ss046, complete genome018250BLASTN svgBLASTP svg
NC_010658:15931371593137161115518019Shigella boydii CDC 3083-94, complete genome017430BLASTN svgBLASTP svg
NC_004741:17924421792442181107618635Shigella flexneri 2a str. 2457T, complete genome013370BLASTN svgBLASTP svg
NC_007606:15154031515403153810522703Shigella dysenteriae Sd197, complete genome09541BLASTN svgBLASTP svg
NC_008258:17509641750964177411123148Shigella flexneri 5 str. 8401, complete genome07824BLASTN svgBLASTP svg
CP002797:15910001591000160930018301Escherichia coli NA114, complete genome07097BLASTN svgBLASTP svg
NC_010498:12101451210145123409923955Escherichia coli SMS-3-5, complete genome02599BLASTN svgBLASTP svg
NC_010498:10940001094000111633222333Escherichia coli SMS-3-5, complete genome02597BLASTN svgBLASTP svg
NC_009800:3685651*3685651370909923449Escherichia coli HS, complete genome02422BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome02407BLASTN svgBLASTP svg
NC_000913:3624826*3624826366560340778Escherichia coli K12, complete genome02405BLASTN svgBLASTP svg
AP010958:43134624313462433479021329Escherichia coli O103:H2 str. 12009 DNA, complete genome02397BLASTN svgBLASTP svg
NC_011748:39834323983432403268849257Escherichia coli 55989, complete genome02381BLASTN svgBLASTP svg
CU928145:39834323983432403268849257Escherichia coli 55989 chromosome, complete genome02381BLASTN svgBLASTP svg
NC_011751:34536833453683351238358701Escherichia coli UMN026 chromosome, complete genome02353BLASTN svgBLASTP svg
NC_004431:3409389*3409389349493685548Escherichia coli CFT073, complete genome02353BLASTN svgBLASTP svg
NC_004741:20097692009769203209922331Shigella flexneri 2a str. 2457T, complete genome02329BLASTN svgBLASTP svg
NC_007384:2933625*2933625295770924085Shigella sonnei Ss046, complete genome02260BLASTN svgBLASTP svg
AC_000091:29762932976293300863132339Escherichia coli W3110 DNA, complete genome02163BLASTN svgBLASTP svg
NC_000913:2975659*2975659300672831070Escherichia coli K12, complete genome02163BLASTN svgBLASTP svg
NC_009788:16360163603711520756Escherichia coli E24377A plasmid pETEC_73, complete sequence02163BLASTN svgBLASTP svg
NC_010473:3069529*3069529310059831070Escherichia coli str. K-12 substr. DH10B, complete genome02163BLASTN svgBLASTP svg
AC_000091:31802753180275319962119347Escherichia coli W3110 DNA, complete genome02161BLASTN svgBLASTP svg
AC_000091:4501430*4501430452291521486Escherichia coli W3110 DNA, complete genome02161BLASTN svgBLASTP svg
NC_000913:3176000*3176000319898722988Escherichia coli K12, complete genome02161BLASTN svgBLASTP svg
NC_000913:44947734494773451470019928Escherichia coli K12, complete genome02161BLASTN svgBLASTP svg
NC_007384:3151344*3151344317840127058Shigella sonnei Ss046, complete genome02161BLASTN svgBLASTP svg
NC_010473:1712984*1712984174109928116Escherichia coli str. K-12 substr. DH10B, complete genome02161BLASTN svgBLASTP svg
NC_010473:3273882*3273882329673222851Escherichia coli str. K-12 substr. DH10B, complete genome02161BLASTN svgBLASTP svg
NC_010473:4596500*4596500461806621567Escherichia coli str. K-12 substr. DH10B, complete genome02161BLASTN svgBLASTP svg
NC_010658:1933605*1933605196015326549Shigella boydii CDC 3083-94, complete genome02153BLASTN svgBLASTP svg
NC_007384:17378851737885176063922755Shigella sonnei Ss046, complete genome02151BLASTN svgBLASTP svg
NC_008258:25428632542863256544822586Shigella flexneri 5 str. 8401, complete genome02147BLASTN svgBLASTP svg
NC_007384:20074672007467203964532179Shigella sonnei Ss046, complete genome02147BLASTN svgBLASTP svg
NC_007384:10860251086025111635930335Shigella sonnei Ss046, complete genome02145BLASTN svgBLASTP svg
NC_007384:37417083741708376309921392Shigella sonnei Ss046, complete genome02141BLASTN svgBLASTP svg
NC_007613:41197714119771413859918829Shigella boydii Sb227, complete genome02139BLASTN svgBLASTP svg
NC_004741:41605004160500418981229313Shigella flexneri 2a str. 2457T, complete genome02139BLASTN svgBLASTP svg
NC_010658:1193225*1193225121671123487Shigella boydii CDC 3083-94, complete genome02137BLASTN svgBLASTP svg
NC_008258:1934479*1934479196306928591Shigella flexneri 5 str. 8401, complete genome02137BLASTN svgBLASTP svg
NC_002695:15713891571389159815826770Escherichia coli O157:H7 str. Sakai, complete genome02123BLASTN svgBLASTP svg
NC_002655:16559441655944168171125768Escherichia coli O157:H7 EDL933, complete genome02123BLASTN svgBLASTP svg
NC_007606:12091321209132122967220541Shigella dysenteriae Sd197, complete genome02121BLASTN svgBLASTP svg
NC_010658:1772994*1772994179509922106Shigella boydii CDC 3083-94, complete genome02121BLASTN svgBLASTP svg
NC_008258:32247213224721324719422474Shigella flexneri 5 str. 8401, complete genome02115BLASTN svgBLASTP svg
NC_004741:3041294*3041294310468963396Shigella flexneri 2a str. 2457T, complete genome02113BLASTN svgBLASTP svg
NC_004337:3049118*3049118311609966982Shigella flexneri 2a str. 301, complete genome02107BLASTN svgBLASTP svg
NC_008258:35505003550500357858028081Shigella flexneri 5 str. 8401, complete genome02099BLASTN svgBLASTP svg
NC_010660:33109331095109917991Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence02085BLASTN svgBLASTP svg
NC_004337:2747917*2747917277096123045Shigella flexneri 2a str. 301, complete genome02070BLASTN svgBLASTP svg
NC_007613:1353500*1353500137891925420Shigella boydii Sb227, complete genome02010BLASTN svgBLASTP svg
AC_000091:1083798*1083798110686123064Escherichia coli W3110 DNA, complete genome01992BLASTN svgBLASTP svg
NC_007384:1320287*1320287134781127525Shigella sonnei Ss046, complete genome01816BLASTN svgBLASTP svg
NC_009790:42112421126914727036Escherichia coli E24377A plasmid pETEC_74, complete sequence01760BLASTN svgBLASTP svg
NC_004851:15767515767518009922425Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence01733BLASTN svgBLASTP svg
NC_010498:32913443291344332017728834Escherichia coli SMS-3-5, complete genome01729BLASTN svgBLASTP svg
NC_010658:36226103622610364133018721Shigella boydii CDC 3083-94, complete genome01695BLASTN svgBLASTP svg
NC_011740:15953811595381161679021410Escherichia fergusonii ATCC 35469, complete genome01338BLASTN svgBLASTP svg
NC_007613:10380001038000106059922600Shigella boydii Sb227, complete genome01308BLASTN svgBLASTP svg
AC_000091:16270491627049165562928581Escherichia coli W3110 DNA, complete genome01185BLASTN svgBLASTP svg
NC_000913:1625500*1625500165193926440Escherichia coli K12, complete genome01185BLASTN svgBLASTP svg
NC_011740:28599332859933288499725065Escherichia fergusonii ATCC 35469, complete genome01183BLASTN svgBLASTP svg
NC_007941:11319113195659945281Escherichia coli UTI89 plasmid pUTI89, complete sequence0971BLASTN svgBLASTP svg
AP010958:3853082*3853082389809945018Escherichia coli O103:H2 str. 12009 DNA, complete genome0704BLASTN svgBLASTP svg
NC_004337:20359452035945205669020746Shigella flexneri 2a str. 301, complete genome0690BLASTN svgBLASTP svg
NC_004431:43191524319152434223723086Escherichia coli CFT073, complete genome0650BLASTN svgBLASTP svg
NC_008563:47078264707826473072322898Escherichia coli APEC O1, complete genome9e-179634BLASTN svgBLASTP svg
CP002797:4603787*4603787464340739621Escherichia coli NA114, complete genome2e-158567BLASTN svgBLASTP svg
NC_008253:48178644817864486276044897Escherichia coli 536, complete genome3e-138500BLASTN svgBLASTP svg
NC_007946:48759974875997491969643700Escherichia coli UTI89, complete genome3e-138500BLASTN svgBLASTP svg
NC_004851:19170919170922249930791Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence1e-137498BLASTN svgBLASTP svg
CU928159:30700*307004909918400Escherichia coli str. 55989 plasmid 55989p, complete genome1e-122448BLASTN svgBLASTP svg
NC_015224:3892972*3892972393636443393Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-47198BLASTN svgBLASTP svg
NC_009649:948719487111709922229Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,4e-42180BLASTN svgBLASTP svg
NC_007384:307013*30701333111524103Shigella sonnei Ss046, complete genome1e-36163BLASTN svgBLASTP svg
NC_011750:10940001094000111509921100Escherichia coli IAI39 chromosome, complete genome9e-28133BLASTN svgBLASTP svg
NC_004431:23042802304280233659932320Escherichia coli CFT073, complete genome2e-25125BLASTN svgBLASTP svg
CP002797:2062006*2062006208330121296Escherichia coli NA114, complete genome2e-25125BLASTN svgBLASTP svg
NC_008258:2045000*2045000206275017751Shigella flexneri 5 str. 8401, complete genome8e-22113BLASTN svgBLASTP svg
NC_011002:70319470319475464351450Burkholderia cenocepacia J2315 chromosome 3, complete sequence3e-1591.7BLASTN svgBLASTP svg
NC_014107:17117017117019899927830Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A,2e-1385.7BLASTN svgBLASTP svg
NC_014121:16826381682638172492542288Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-1385.7BLASTN svgBLASTP svg
NC_014121:20906302090630212903438405Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-1385.7BLASTN svgBLASTP svg
NC_014121:23304512330451236009929649Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-1385.7BLASTN svgBLASTP svg
NC_014121:35538093553809358001526207Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-1385.7BLASTN svgBLASTP svg
NC_014121:4299500*4299500433477235273Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-1385.7BLASTN svgBLASTP svg
NC_014121:50000695000069503057530507Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-1385.7BLASTN svgBLASTP svg
NC_014121:677799*67779969989822100Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete2e-1385.7BLASTN svgBLASTP svg
NC_020064:3998715*3998715409080492090Serratia marcescens FGI94, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_007650:42074542074544753126787Burkholderia thailandensis E264 chromosome II, complete sequence7e-1383.8BLASTN svgBLASTP svg
NC_007650:841408414010870224563Burkholderia thailandensis E264 chromosome II, complete sequence7e-1383.8BLASTN svgBLASTP svg
NC_007651:1620000*1620000165256732568Burkholderia thailandensis E264 chromosome I, complete sequence7e-1383.8BLASTN svgBLASTP svg
NC_007651:17264721726472175232825857Burkholderia thailandensis E264 chromosome I, complete sequence7e-1383.8BLASTN svgBLASTP svg
NC_007651:3064530*30645303173670109141Burkholderia thailandensis E264 chromosome I, complete sequence7e-1383.8BLASTN svgBLASTP svg
NC_015424:24625222462522248308820567Aeromonas veronii B565 chromosome, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002695:38522333852233387887626644Escherichia coli O157:H7 str. Sakai, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_002655:39195453919545394618926645Escherichia coli O157:H7 EDL933, complete genome2e-1075.8BLASTN svgBLASTP svg
AP010958:5090696*5090696512565934964Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-1075.8BLASTN svgBLASTP svg
AP010958:36273553627355365976432410Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_009778:2227627*2227627228586658240Enterobacter sakazakii ATCC BAA-894, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_003296:67379067379072609952310Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, complete4e-0867.9BLASTN svgBLASTP svg
NC_010508:19806891980689200677326085Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence7e-0763.9BLASTN svgBLASTP svg
NC_002695:3468873*3468873351343744565Escherichia coli O157:H7 str. Sakai, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_002655:3538656*3538656358072742072Escherichia coli O157:H7 EDL933, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014121:48950048950052159932100Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete3e-0661.9BLASTN svgBLASTP svg
NC_011083:45478254547825460814560321Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,3e-0661.9BLASTN svgBLASTP svg
NC_008253:3122148*3122148315923237085Escherichia coli 536, complete genome3e-0661.9BLASTN svgBLASTP svg