Pre_GI: BLASTN Hits

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Query: NC_010498:1117938 Escherichia coli SMS-3-5, complete genome

Start: 1117938, End: 1149531, Length: 31594

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Escherichia coli SMS-3-5 was isolated from a toxic-metal contaminated site, Shipyard Creek, Charleston, South Carolina, USA. This strain is highly resistant to a number of antibiotics. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008253:20567342056734207917122438Escherichia coli 536, complete genome08084BLASTN svgBLASTP svg
NC_007946:21554542155454218077025317Escherichia coli UTI89, complete genome08084BLASTN svgBLASTP svg
NC_004431:23042802304280233659932320Escherichia coli CFT073, complete genome08084BLASTN svgBLASTP svg
CP002797:2062006*2062006208330121296Escherichia coli NA114, complete genome08084BLASTN svgBLASTP svg
NC_011750:10940001094000111509921100Escherichia coli IAI39 chromosome, complete genome05580BLASTN svgBLASTP svg
NC_007946:1119000*1119000114261923620Escherichia coli UTI89, complete genome02238BLASTN svgBLASTP svg
NC_010498:10940001094000111633222333Escherichia coli SMS-3-5, complete genome02169BLASTN svgBLASTP svg
NC_011748:3360967*3360967340151440548Escherichia coli 55989, complete genome02006BLASTN svgBLASTP svg
CU928145:3360967*3360967340151440548Escherichia coli 55989 chromosome, complete genome02006BLASTN svgBLASTP svg
NC_002655:11039911103991112782323833Escherichia coli O157:H7 EDL933, complete genome01913BLASTN svgBLASTP svg
NC_004431:4955658*4955658497950623849Escherichia coli CFT073, complete genome01794BLASTN svgBLASTP svg
NC_008563:33321143332114335140519292Escherichia coli APEC O1, complete genome01794BLASTN svgBLASTP svg
NC_004431:1211000*1211000123322222223Escherichia coli CFT073, complete genome01550BLASTN svgBLASTP svg
NC_004431:43191524319152434223723086Escherichia coli CFT073, complete genome01213BLASTN svgBLASTP svg
NC_008563:47078264707826473072322898Escherichia coli APEC O1, complete genome01197BLASTN svgBLASTP svg
NC_007607:870008700012362836629Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence01191BLASTN svgBLASTP svg
NC_010660:864458644510942022976Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence01168BLASTN svgBLASTP svg
AP010958:36273553627355365976432410Escherichia coli O103:H2 str. 12009 DNA, complete genome0993BLASTN svgBLASTP svg
NC_002695:38522333852233387887626644Escherichia coli O157:H7 str. Sakai, complete genome0985BLASTN svgBLASTP svg
AP010958:5090696*5090696512565934964Escherichia coli O103:H2 str. 12009 DNA, complete genome0985BLASTN svgBLASTP svg
NC_002655:39195453919545394618926645Escherichia coli O157:H7 EDL933, complete genome0979BLASTN svgBLASTP svg
AP010958:2455052*2455052247359918548Escherichia coli O103:H2 str. 12009 DNA, complete genome0969BLASTN svgBLASTP svg
NC_020260:603796*60379665197748182Cronobacter sakazakii Sp291, complete genome5e-144519BLASTN svgBLASTP svg
NC_012779:91600091600093379317794Edwardsiella ictaluri 93-146, complete genome2e-128468BLASTN svgBLASTP svg
NC_012779:34699834699837871931722Edwardsiella ictaluri 93-146, complete genome7e-128466BLASTN svgBLASTP svg
NC_012779:26648492664849268361918771Edwardsiella ictaluri 93-146, complete genome7e-128466BLASTN svgBLASTP svg
NC_012779:2928000*2928000295428726288Edwardsiella ictaluri 93-146, complete genome3e-127464BLASTN svgBLASTP svg
NC_012779:30596930596933285826890Edwardsiella ictaluri 93-146, complete genome3e-127464BLASTN svgBLASTP svg
NC_012779:95755895755898306025503Edwardsiella ictaluri 93-146, complete genome3e-127464BLASTN svgBLASTP svg
NC_012779:20645822064582209112726546Edwardsiella ictaluri 93-146, complete genome2e-125458BLASTN svgBLASTP svg
NC_012779:1449500*1449500150683157332Edwardsiella ictaluri 93-146, complete genome7e-125456BLASTN svgBLASTP svg
NC_012779:19662051966205198609919895Edwardsiella ictaluri 93-146, complete genome7e-125456BLASTN svgBLASTP svg
NC_012779:21275422127542216530837767Edwardsiella ictaluri 93-146, complete genome7e-125456BLASTN svgBLASTP svg
NC_012779:21849272184927220656121635Edwardsiella ictaluri 93-146, complete genome7e-125456BLASTN svgBLASTP svg
NC_013508:16874321687432172109933668Edwardsiella tarda EIB202, complete genome1e-123452BLASTN svgBLASTP svg
NC_012779:3176820*3176820323178054961Edwardsiella ictaluri 93-146, complete genome4e-123450BLASTN svgBLASTP svg
NC_012779:610509*61050963687526367Edwardsiella ictaluri 93-146, complete genome2e-122448BLASTN svgBLASTP svg
NC_012779:26198712619871264372223852Edwardsiella ictaluri 93-146, complete genome2e-122448BLASTN svgBLASTP svg
NC_012779:12865001286500132459938100Edwardsiella ictaluri 93-146, complete genome2e-122448BLASTN svgBLASTP svg
NC_003198:44534574453457450773054274Salmonella enterica subsp. enterica serovar Typhi str. CT18,8e-106392BLASTN svgBLASTP svg
NC_009792:85922885922888559926372Citrobacter koseri ATCC BAA-895, complete genome7e-94353BLASTN svgBLASTP svg
NC_020181:473170*47317050009926930Enterobacter aerogenes EA1509E, complete genome7e-94353BLASTN svgBLASTP svg
NC_002947:737924*73792476633928416Pseudomonas putida KT2440, complete genome3e-59238BLASTN svgBLASTP svg
NC_008782:2326439*2326439236857442136Acidovorax sp. JS42, complete genome1e-49206BLASTN svgBLASTP svg
NC_004431:32400032400034580421805Escherichia coli CFT073, complete genome6e-48200BLASTN svgBLASTP svg
NC_008118:567775677710299946223Yersinia pestis Nepal516 plasmid pMT, complete sequence2e-41178BLASTN svgBLASTP svg
NC_006155:2461262*2461262248869127430Yersinia pseudotuberculosis IP 32953, complete genome2e-41178BLASTN svgBLASTP svg
NC_005810:15200001520000154409924100Yersinia pestis biovar Microtus str. 91001, complete genome2e-41178BLASTN svgBLASTP svg
NC_004838:510135101310003049018Yersinia pestis KIM plasmid pMT-1, complete sequence2e-41178BLASTN svgBLASTP svg
NC_004088:22272782227278224825620979Yersinia pestis KIM, complete genome2e-41178BLASTN svgBLASTP svg
NC_004088:15104671510467153309222626Yersinia pestis KIM, complete genome2e-41178BLASTN svgBLASTP svg
NC_004088:12657301265730129020024471Yersinia pestis KIM, complete genome2e-41178BLASTN svgBLASTP svg
NC_003143:31912463191246321275521510Yersinia pestis CO92, complete genome2e-41178BLASTN svgBLASTP svg
NC_003143:31159333115933313845922527Yersinia pestis CO92, complete genome2e-41178BLASTN svgBLASTP svg
NC_003134:64672646728918124510Yersinia pestis CO92 plasmid pMT1, complete sequence2e-41178BLASTN svgBLASTP svg
NC_008120:62000620008949927500Yersinia pestis Antiqua plasmid pMT, complete sequence2e-41178BLASTN svgBLASTP svg
NC_008149:11956141195614122004824435Yersinia pestis Nepal516, complete genome2e-41178BLASTN svgBLASTP svg
NC_010634:20046532004653202887424222Yersinia pseudotuberculosis PB1/+, complete genome2e-41178BLASTN svgBLASTP svg
NC_010159:22523802252380227191719538Yersinia pestis Angola, complete genome2e-41178BLASTN svgBLASTP svg
NC_010159:17246917246919591323445Yersinia pestis Angola, complete genome2e-41178BLASTN svgBLASTP svg
NC_008150:90500090500092909924100Yersinia pestis Antiqua, complete genome2e-41178BLASTN svgBLASTP svg
NC_008150:28226892822689284340720719Yersinia pestis Antiqua, complete genome2e-41178BLASTN svgBLASTP svg
NC_008150:25747942574794259632821535Yersinia pestis Antiqua, complete genome2e-41178BLASTN svgBLASTP svg
NC_008150:21737082173708219609922392Yersinia pestis Antiqua, complete genome2e-41178BLASTN svgBLASTP svg
NC_008149:27731392773139279513521997Yersinia pestis Nepal516, complete genome2e-41178BLASTN svgBLASTP svg
NC_008149:1842500*1842500188064438145Yersinia pestis Nepal516, complete genome2e-41178BLASTN svgBLASTP svg
NC_008149:14403711440371146301222642Yersinia pestis Nepal516, complete genome2e-41178BLASTN svgBLASTP svg
NC_012560:2026483*2026483204663320151Azotobacter vinelandii DJ, complete genome9e-41176BLASTN svgBLASTP svg
NC_021150:2026496*2026496204664620151Azotobacter vinelandii CA6, complete genome9e-41176BLASTN svgBLASTP svg
NC_005810:3021913*3021913304567123759Yersinia pestis biovar Microtus str. 91001, complete genome6e-39170BLASTN svgBLASTP svg
NC_005810:25086712508671253418625516Yersinia pestis biovar Microtus str. 91001, complete genome6e-39170BLASTN svgBLASTP svg
NC_005810:12309761230976125037019395Yersinia pestis biovar Microtus str. 91001, complete genome6e-39170BLASTN svgBLASTP svg
NC_004088:29370772937077296291925843Yersinia pestis KIM, complete genome6e-39170BLASTN svgBLASTP svg
NC_004088:25410332541033256388322851Yersinia pestis KIM, complete genome6e-39170BLASTN svgBLASTP svg
NC_004088:2366000*2366000239081024811Yersinia pestis KIM, complete genome6e-39170BLASTN svgBLASTP svg
NC_004088:1909880*1909880193439224513Yersinia pestis KIM, complete genome6e-39170BLASTN svgBLASTP svg
NC_003143:27414782741478276426222785Yersinia pestis CO92, complete genome6e-39170BLASTN svgBLASTP svg
NC_003143:2433190*2433190245920626017Yersinia pestis CO92, complete genome6e-39170BLASTN svgBLASTP svg
NC_003143:16910001691000171055719558Yersinia pestis CO92, complete genome6e-39170BLASTN svgBLASTP svg
NC_005810:31423843142384317894536562Yersinia pestis biovar Microtus str. 91001, complete genome6e-39170BLASTN svgBLASTP svg
NC_005810:32727653272765329109918335Yersinia pestis biovar Microtus str. 91001, complete genome6e-39170BLASTN svgBLASTP svg
NC_005810:3964468*3964468399026325796Yersinia pestis biovar Microtus str. 91001, complete genome6e-39170BLASTN svgBLASTP svg
NC_010159:409500*40950045168242183Yersinia pestis Angola, complete genome6e-39170BLASTN svgBLASTP svg
NC_010159:31692663169266318806418799Yersinia pestis Angola, complete genome6e-39170BLASTN svgBLASTP svg
NC_010159:30339893033989305747023482Yersinia pestis Angola, complete genome6e-39170BLASTN svgBLASTP svg
NC_010159:29555622955562297845722896Yersinia pestis Angola, complete genome6e-39170BLASTN svgBLASTP svg
NC_010159:24409472440947245913218186Yersinia pestis Angola, complete genome6e-39170BLASTN svgBLASTP svg
NC_010159:138879*13887916617427296Yersinia pestis Angola, complete genome6e-39170BLASTN svgBLASTP svg
NC_010159:12880001288000132559537596Yersinia pestis Angola, complete genome6e-39170BLASTN svgBLASTP svg
NC_010158:928199281911499922181Yersinia pestis Angola plasmid pMT-pPCP, complete sequence6e-39170BLASTN svgBLASTP svg
NC_008150:1705152*1705152174460539454Yersinia pestis Antiqua, complete genome6e-39170BLASTN svgBLASTP svg
NC_005815:611486114811099949852Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, complete6e-39170BLASTN svgBLASTP svg
NC_008149:11226931122693115815435462Yersinia pestis Nepal516, complete genome3e-37165BLASTN svgBLASTP svg
NC_012912:1701231*1701231174963148401Dickeya zeae Ech1591, complete genome3e-37165BLASTN svgBLASTP svg
NC_012912:22857782285778231059124814Dickeya zeae Ech1591, complete genome3e-37165BLASTN svgBLASTP svg
NC_005810:44691564469156448873019575Yersinia pestis biovar Microtus str. 91001, complete genome1e-36163BLASTN svgBLASTP svg
NC_010159:2546590*2546590256968123092Yersinia pestis Angola, complete genome3e-34155BLASTN svgBLASTP svg
NC_014306:64215264215266635524204Erwinia billingiae Eb661, complete genome3e-31145BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome3e-28135BLASTN svgBLASTP svg
NC_006905:29878632987863300811020248Salmonella enterica subsp. enterica serovar Choleraesuis str2e-26129BLASTN svgBLASTP svg
NC_010102:29674642967464302271055247Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-26129BLASTN svgBLASTP svg
NC_011080:29823462982346303624053895Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-26129BLASTN svgBLASTP svg
NC_011149:29122192912219296814855930Salmonella enterica subsp. enterica serovar Agona str. SL483,2e-26129BLASTN svgBLASTP svg
NC_013717:572657263053624811Citrobacter rodentium ICC168 plasmid pCROD1, complete sequence2e-26129BLASTN svgBLASTP svg
NC_012214:3931824*3931824395459922776Erwinia pyrifoliae Ep1/96, complete genome3e-25125BLASTN svgBLASTP svg
NC_002695:17946351794635181624421610Escherichia coli O157:H7 str. Sakai, complete genome2e-23119BLASTN svgBLASTP svg
NC_002655:22647732264773228824723475Escherichia coli O157:H7 EDL933, complete genome2e-23119BLASTN svgBLASTP svg
NC_012214:53700053700055834721348Erwinia pyrifoliae Ep1/96, complete genome7e-23117BLASTN svgBLASTP svg
NC_012214:12126161212616123625023635Erwinia pyrifoliae Ep1/96, complete genome7e-23117BLASTN svgBLASTP svg
NC_012214:35029923502992352409021099Erwinia pyrifoliae Ep1/96, complete genome2e-20109BLASTN svgBLASTP svg
NC_007606:4182188*4182188420162219435Shigella dysenteriae Sd197, complete genome2e-20109BLASTN svgBLASTP svg
NC_013223:2609697*2609697264530735611Desulfohalobium retbaense DSM 5692, complete genome4e-18101BLASTN svgBLASTP svg
NC_006905:1961774*1961774198409922326Salmonella enterica subsp. enterica serovar Choleraesuis str1e-1593.7BLASTN svgBLASTP svg
NC_008149:2517538*2517538254015722620Yersinia pestis Nepal516, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_006905:65173265173267724625515Salmonella enterica subsp. enterica serovar Choleraesuis str2e-1489.7BLASTN svgBLASTP svg
NC_005810:1663672*1663672168742323752Yersinia pestis biovar Microtus str. 91001, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_004088:2691565*2691565271495023386Yersinia pestis KIM, complete genome2e-1489.7BLASTN svgBLASTP svg
NC_010102:11372471137247116298725741Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,6e-1487.7BLASTN svgBLASTP svg
NC_003197:1945858*1945858197472828871Salmonella typhimurium LT2, complete genome3e-1385.7BLASTN svgBLASTP svg
NC_003198:18674561867456189339125936Salmonella enterica subsp. enterica serovar Typhi str. CT18,3e-1385.7BLASTN svgBLASTP svg
NC_004631:10913031091303111095919657Salmonella enterica subsp. enterica serovar Typhi Ty2, complete3e-1385.7BLASTN svgBLASTP svg
NC_006511:10632491063249108659923351Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC3e-1385.7BLASTN svgBLASTP svg
NC_011080:1944226*1944226198035236127Salmonella enterica subsp. enterica serovar Newport str. SL254,3e-1385.7BLASTN svgBLASTP svg
NC_011083:1993672*1993672201930525634Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,3e-1385.7BLASTN svgBLASTP svg
NC_011149:44740124474012449847024459Salmonella enterica subsp. enterica serovar Agona str. SL483,1e-1283.8BLASTN svgBLASTP svg
NC_010102:44778364477836450325125416Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,1e-1283.8BLASTN svgBLASTP svg
NC_006905:4486433*4486433450919922767Salmonella enterica subsp. enterica serovar Choleraesuis str1e-1283.8BLASTN svgBLASTP svg
NC_010488:48868488687267123804Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequence4e-1281.8BLASTN svgBLASTP svg
NC_012779:28560512856051288659930549Edwardsiella ictaluri 93-146, complete genome2e-1179.8BLASTN svgBLASTP svg
NC_004851:19170919170922249930791Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence2e-1179.8BLASTN svgBLASTP svg
NC_013205:289291*28929131395124661Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,6e-1177.8BLASTN svgBLASTP svg
NC_007645:4677965*4677965469591417950Hahella chejuensis KCTC 2396, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_011083:45478254547825460814560321Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-1075.8BLASTN svgBLASTP svg
NC_013716:1178383*1178383120516726785Citrobacter rodentium ICC168, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015379:90890490890497110662203Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,2e-1075.8BLASTN svgBLASTP svg
NC_008346:22513532251353226935218000Syntrophomonas wolfei subsp. wolfei str. Goettingen, complete4e-0971.9BLASTN svgBLASTP svg
NC_008346:14310511431051145644725397Syntrophomonas wolfei subsp. wolfei str. Goettingen, complete4e-0971.9BLASTN svgBLASTP svg
NC_010337:61630461630464593229629Heliobacterium modesticaldum Ice1, complete genome6e-0867.9BLASTN svgBLASTP svg
NC_010658:1933605*1933605196015326549Shigella boydii CDC 3083-94, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009801:3374501*3374501339880324303Escherichia coli E24377A, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009801:17566101756610177871522106Escherichia coli E24377A, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_009790:42112421126914727036Escherichia coli E24377A plasmid pETEC_74, complete sequence2e-0765.9BLASTN svgBLASTP svg
CP002797:4603787*4603787464340739621Escherichia coli NA114, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013716:1138441*1138441116841529975Citrobacter rodentium ICC168, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013716:24763342476334249822421891Citrobacter rodentium ICC168, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013716:27645502764550279838233833Citrobacter rodentium ICC168, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013716:33278813327881336492937049Citrobacter rodentium ICC168, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013716:37084153708415373077822364Citrobacter rodentium ICC168, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013716:4306695*4306695439827491580Citrobacter rodentium ICC168, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013716:4824541*4824541484830623766Citrobacter rodentium ICC168, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015737:14410861441086146024319158Clostridium sp. SY8519, complete genome2e-0765.9BLASTN svgBLASTP svg
AP010958:3853082*3853082389809945018Escherichia coli O103:H2 str. 12009 DNA, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_004431:3409389*3409389349493685548Escherichia coli CFT073, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_010658:36226103622610364133018721Shigella boydii CDC 3083-94, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_010660:33109331095109917991Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence9e-0763.9BLASTN svgBLASTP svg
NC_011751:34536833453683351238358701Escherichia coli UMN026 chromosome, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_014973:493500*49350051995726458Geobacter sp. M18 chromosome, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_008253:334467*33446741611981653Escherichia coli 536, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_010003:449192*44919247891429723Petrotoga mobilis SJ95, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_013173:3890370*3890370390934018971Desulfomicrobium baculatum DSM 4028, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_013411:3201331*3201331322466223332Geobacillus sp. Y412MC61, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_013508:876431*87643191551339083Edwardsiella tarda EIB202, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_014915:3207300*3207300323063123332Geobacillus sp. Y412MC52 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_015224:27019142701914272426222349Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,4e-0661.9BLASTN svgBLASTP svg
NC_015975:380500*38050040582525326Lactobacillus ruminis ATCC 27782 chromosome, complete genome4e-0661.9BLASTN svgBLASTP svg
NC_002927:5327094*5327094535399926906Bordetella bronchiseptica RB50, complete genome4e-0661.9BLASTN svgBLASTP svg