Some Help

Query: NC_010475:1161000 Synechococcus sp. PCC 7002, complete genome

Start: 1161000, End: 1187090, Length: 26091

Host Lineage: Synechococcus; Synechococcus; Synechococcaceae; Chroococcales; Cyanobacteria; Bacteria

General Information: The cyanobacterium Synechococcus sp. PCC 7002 (formerly known as Agmenellum quadruplicatum strain PR-6) was originally isolated in 1961 by Chase Van Baalen from an onshore, marine mud flat sample derived from fish pens on Maguyes Island, La Parguera, Puerto Rico. The organism grows in brackish (euryhaline/marine) water and is unicellular but tends to form short filaments of two to four cells during exponential growth at the temperature optimum of 38 degrees C. The strain is extremely tolerant of high light intensities and has been grown at light intensities equivalent to two suns. This unique combination of physiological and genetic properties have long made this strain an important model system to studies of the oxygenic photosynthetic apparatus, the regulation of carbon and nitrogen metabolism, and other aspects of cyanobacterial physiology and metabolism.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_014910:75519275519280336548174Alicycliphilus denitrificans BC chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_011884:25847912584791260874223952Cyanothece sp. PCC 7425, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_007517:16766041676604171020033597Geobacter metallireducens GS-15, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_005125:2366778*2366778239059123814Gloeobacter violaceus PCC 7421, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014323:50510415051041507664325603Herbaspirillum seropedicae SmR1 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_010296:54846245484624550502320400Microcystis aeruginosa NIES-843, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007908:11084941108494116189953406Rhodoferax ferrireducens T118, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_006576:23284272328427235506226636Synechococcus elongatus PCC 6301, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_007604:19677701967770199346325694Synechococcus elongatus PCC 7942, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_008319:13686313686316274425882Synechococcus sp. CC9311, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007516:124486*12448616330438819Synechococcus sp. CC9605, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_000911:1611500*1611500164476733268Synechocystis sp. PCC 6803, complete genome9e-1693.7BLASTN svgBLASTP svg