Pre_GI: BLASTN Hits

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Query: NC_010407:410918 Clavibacter michiganensis subsp. sepedonicus chromosome, complete

Start: 410918, End: 435272, Length: 24355

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Causative agent of bacterial ring rot. Isolated from infected potato. This organism was first described and classified in 1914 as "Bacterium sepedonicus" and is considered a major plant pathogen. It is a phytopathogenic actinomycete that causes wilt and tuber rot in potato, which is a plant vascular disease with very high bacterial titers. Pathogenicity is believed to be associated with the presence of two plasmids, pCSL1 and pCSL2. This species is subdivided into five subspecies: michiganensis, sepedonicus, nebraskensis, tesselarius and insidiosus each of which infects specific hosts: tomato, potato, corn, wheat and alfalfa, respectively. Members of the Clavibacter genus are known to produce antimicrobial compounds.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015376:20619902061990208910227113Burkholderia gladioli BSR3 chromosome chromosome 2, complete2e-1075.8BLASTN svgBLASTP svg
NC_015514:47793547793550079522861Cellulomonas fimi ATCC 484 chromosome, complete genome3e-18101BLASTN svgBLASTP svg
NC_015514:18177318177320534923577Cellulomonas fimi ATCC 484 chromosome, complete genome3e-18101BLASTN svgBLASTP svg
NC_010407:151599*15159917558923991Clavibacter michiganensis subsp. sepedonicus chromosome, complete02099BLASTN svgBLASTP svg
NC_010407:31744703174470319754523076Clavibacter michiganensis subsp. sepedonicus chromosome, complete02070BLASTN svgBLASTP svg
NC_010407:11144081114408113894624539Clavibacter michiganensis subsp. sepedonicus chromosome, complete5e-1177.8BLASTN svgBLASTP svg
NC_010407:20384992038499205674718249Clavibacter michiganensis subsp. sepedonicus chromosome, complete02058BLASTN svgBLASTP svg
NC_010407:31326833132683315489022208Clavibacter michiganensis subsp. sepedonicus chromosome, complete01485BLASTN svgBLASTP svg
NC_010407:24061132406113242499918887Clavibacter michiganensis subsp. sepedonicus chromosome, complete02131BLASTN svgBLASTP svg
NC_010407:32960*329605163318674Clavibacter michiganensis subsp. sepedonicus chromosome, complete02103BLASTN svgBLASTP svg
NC_010399:13222132223559922378Clavibacter michiganensis subsp. sepedonicus plasmid pCS1, complete02097BLASTN svgBLASTP svg
NC_007164:18391541839154187426735114Corynebacterium jeikeium K411, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_013757:1544348*1544348158219937852Geodermatophilus obscurus DSM 43160, complete genome2e-31145BLASTN svgBLASTP svg
NC_015125:32840953284095330809924005Microbacterium testaceum StLB037, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014391:46445004644500466983025331Micromonospora aurantiaca ATCC 27029 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013521:345308*34530838171936412Sanguibacter keddieii DSM 10542, complete genome1e-54222BLASTN svgBLASTP svg
NC_020211:3398281*3398281342338225102Serratia marcescens WW4, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_014158:16513261651326167532524000Tsukamurella paurometabola DSM 20162 chromosome, complete genome3e-1591.7BLASTN svgBLASTP svg