Pre_GI: BLASTP Hits

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Query: NC_010322:583842:617617 Pseudomonas putida GB-1 chromosome, complete genome

Start: 617617, End: 619059, Length: 1443

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006322:1994000:2008999200899920104111413Bacillus licheniformis ATCC 14580, complete genomeAlsT2e-94346
NC_015565:2827444:2828899282889928303591461Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeamino acid carrier protein1e-87324
NC_015519:2580310:2598494259849425998971404Tepidanaerobacter sp. Re1 chromosome, complete genomeamino acid carrier protein1e-87323
NC_007963:3500468:3503735350373535052161482Chromohalobacter salexigens DSM 3043, complete genomeamino acid carrier protein9e-87321
NC_009654:91096:9109691096925021407Marinomonas sp. MWYL1, complete genomeamino acid carrier protein5e-80298
NC_014752:131994:1529371529371543641428Neisseria lactamica ST-640, complete genomeinner membrane amino-acid transport protein2e-74280
NC_009328:293000:3559613559613574301470Geobacillus thermodenitrificans NG80-2 chromosome, complete genomealanine carrier protein2e-74280
NC_015424:2462522:2468054246805424695531500Aeromonas veronii B565 chromosome, complete genomealanine symporter family protein5e-73275
NC_014206:411143:4228024228024242711470Geobacillus sp. C56-T3 chromosome, complete genomeamino acid carrier protein8e-73275
NC_014121:2629075:2650831265083126523361506Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completesodium:alanine symporter family protein9e-73274
NC_016612:2223357:2224208222420822256381431Klebsiella oxytoca KCTC 1686 chromosome, complete genomeinner membrane transport protein3e-72273
CP002516:4081484:4102665410266541040951431Escherichia coli KO11, complete genomeamino acid carrier protein6e-72271
NC_016902:4081484:4102665410266541040951431Escherichia coli KO11FL chromosome, complete genomeamino acid carrier protein6e-72271
NC_020064:79422:8613586135876251491Serratia marcescens FGI94, complete genomeamino acid carrier protein2e-71270
NC_017317:1598925:1606776160677616082421467Corynebacterium ulcerans 809 chromosome, complete genomehypothetical protein9e-71268
NC_016048:3667890:3667890366789036692961407Oscillibacter valericigenes Sjm18-20, complete genomesodium/glutamine symporter1e-70267
NC_007482:607365:6094566094566108621407Pseudoalteromonas haloplanktis TAC125 chromosome II, completeputative amino acid permease1e-70267
NC_015554:2505437:2507163250716325085661404Alteromonas sp. SN2 chromosome, complete genomeputative amino acid permease8e-70265
NC_017303:1454841:1464479146447914659451467Corynebacterium pseudotuberculosis I19 chromosome, complete genomeNa+/alanine symporter family6e-70265
NC_006510:372826:3927993927993942681470Geobacillus kaustophilus HTA426, complete genomesodium:alanine symporter1e-68261
NC_013740:571879:5901465901465915521407Acidaminococcus fermentans DSM 20731, complete genomeamino acid carrier protein1e-65250
NC_014624:828943:8505628505628520731512Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein3e-63243
NC_014218:253558:2630742630742645161443Arcanobacterium haemolyticum DSM 20595 chromosome, complete genomeamino acid carrier protein3e-62239
NC_013456:3011518:3013082301308230146291548Vibrio sp. Ex25 chromosome 1, complete genomesodium/alanine symporter5e-62239
NC_018664:2459994:2465221246522124665731353Clostridium acidurici 9a chromosome, complete genomesodium:alanine symporter family protein2e-58226
NC_016048:3856665:3874983387498338764821500Oscillibacter valericigenes Sjm18-20, complete genomeputative sodium/alanine symporter5e-58225
NC_018664:2459994:2466782246678224681401359Clostridium acidurici 9a chromosome, complete genomesodium:alanine symporter family protein1e-56221
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome3e-54213
NC_014150:3085013:3100197310019731016061410Brachyspira murdochii DSM 12563 chromosome, complete genomeamino acid carrier protein1e-52207
NC_016602:2037162:2046445204644520477461302Vibrio furnissii NCTC 11218 chromosome 1, complete sequencesodium/alanine symporter5e-50199
NC_004193:375416:4013154013154027121398Oceanobacillus iheyensis HTE831, complete genomeamino acid transporter1e-49197
NC_008700:3514745:3514745351474535161391395Shewanella amazonensis SB2B, complete genomesodium:alanine symporter family protein7e-49195
NC_018607:662697:6759406759406773401401Brachyspira pilosicoli B2904 chromosome, complete genomeamino acid carrier protein2e-48194
NC_018604:789575:8028488028488042481401Brachyspira pilosicoli WesB complete genomeamino acid carrier protein2e-48193
NC_014150:3085013:3098595309859530999951401Brachyspira murdochii DSM 12563 chromosome, complete genomeamino acid carrier protein2e-48193
NC_018604:789575:8044698044698058781410Brachyspira pilosicoli WesB complete genomesodium:alanine symporter family protein5e-48192
NC_019908:1225690:1229460122946012308691410Brachyspira pilosicoli P43/6/78 chromosome, complete genomesodium:alanine symporter family protein5e-48192
NC_018607:662697:6775616775616789701410Brachyspira pilosicoli B2904 chromosome, complete genomesodium:alanine symporter family protein5e-48192
NC_011901:837085:8622478622478636231377Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completesodium/alanine symporter5e-48192
NC_014330:2026193:2041077204107720424861410Brachyspira pilosicoli 95/1000 chromosome, complete genomesodium:alanine symporter family protein5e-48192
NC_019908:1225690:1231090123109012324901401Brachyspira pilosicoli P43/6/78 chromosome, complete genomeamino acid carrier protein4e-48192
NC_014377:1400544:1418209141820914195971389Thermosediminibacter oceani DSM 16646 chromosome, complete genomeamino acid carrier protein1e-47191
NC_016613:1805907:1821470182147018228431374Vibrio sp. EJY3 chromosome 1, complete sequencesodium/alanine symporter2e-46187
NC_014330:2026193:2039552203955220408561305Brachyspira pilosicoli 95/1000 chromosome, complete genomesodium:alanine symporter family protein4e-46186
NC_012578:1465302:1476399147639914777751377Vibrio cholerae M66-2 chromosome I, complete sequencesodium/alanine symporter6e-46185
NC_002505:1507860:1518957151895715203331377Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completesodium/alanine symporter6e-46185
NC_012668:2115228:2123738212373821251141377Vibrio cholerae MJ-1236 chromosome 1, complete sequencesodium/alanine symporter6e-46185
NC_016445:984856:9959529959529973281377Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completealanine or glycine:cation symporter, AGCS family6e-46185
NC_016944:1504888:1515985151598515173611377Vibrio cholerae IEC224 chromosome I, complete sequencealanine or glycine:cation symporter, AGCS family protein6e-46185
NC_009457:1068000:1077378107737810787481371Vibrio cholerae O395 chromosome 2, complete sequencesodium/alanine symporter8e-46185
NC_010545:1729161:1745105174510517465921488Corynebacterium urealyticum DSM 7109, complete genomeputative sodium/alanine symporter family protein1e-45184
NC_009142:5425763:5434893543489354364581566Saccharopolyspora erythraea NRRL 2338, complete genomeNa(+)-linked D-alanine glycine permease4e-44179
NC_014538:1975385:1977843197784319792071365Thermoanaerobacter sp. X513 chromosome, complete genomeamino acid carrier protein4e-44179
NC_008700:312099:3319463319463333791434Shewanella amazonensis SB2B, complete genomesodium/alanine symporter1e-43177
NC_008319:1081614:1085682108568210870371356Synechococcus sp. CC9311, complete genomeSodium:alanine symporter family protein3e-43176
NC_010718:2977021:2987862298786229892141353Natranaerobius thermophilus JW/NM-WN-LF, complete genomeamino acid carrier protein5e-43175
NC_015638:2045500:2045539204553920471551617Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeamino acid carrier protein1e-42174
NC_017515:155634:1797251797251811161392Neisseria meningitidis M04-240196 chromosome, complete genomesodium/alanine symporter family protein2e-42173
NC_017505:148644:1739711739711753621392Neisseria meningitidis alpha710 chromosome, complete genomeputative sodium/alanine symporter2e-42173
NC_017513:141291:1657051657051670961392Neisseria meningitidis G2136 chromosome, complete genomesodium/alanine symporter family protein2e-42173
NC_017518:150991:1750941750941764851392Neisseria meningitidis NZ-05/33 chromosome, complete genomesodium/alanine symporter family protein2e-42173
NC_003112:149593:1736811736811750721392Neisseria meningitidis MC58, complete genomeputative sodium/alanine symporter7e-42172
NC_017501:147933:1727671727671741581392Neisseria meningitidis 8013, complete genomeputative amino-acid symporter7e-42172
NC_017516:149657:1737431737431751341392Neisseria meningitidis H44/76 chromosome, complete genomesodium/alanine symporter family protein7e-42172
NC_017517:153379:1771701771701785611392Neisseria meningitidis M01-240355 chromosome, complete genomesodium/alanine symporter family protein7e-42172
NC_004557:2078000:2098988209898821004961509Clostridium tetani E88, complete genomeNa(+)-linked D-alanine glycine permease6e-42172
NC_008593:1631438:1645219164521916466071389Clostridium novyi NT, complete genomesodium/alanine symporter family protein4e-42172
NC_008767:136958:1613721613721627631392Neisseria meningitidis FAM18, complete genomeputative amino-acid transporter9e-42171
NC_014225:1403007:1412272141227214136391368Waddlia chondrophila WSU 86-1044 chromosome, complete genomeD-alanine/glycine transport protein, sodium- dependent2e-41170
NC_015161:36668:5483254832563581527Deinococcus proteolyticus MRP chromosome, complete genomeamino acid carrier protein5e-41169
NC_014150:1523108:1534011153401115353841374Brachyspira murdochii DSM 12563 chromosome, complete genomeamino acid carrier protein7e-41168
NC_015425:1867620:1884455188445518858461392Clostridium botulinum BKT015925 chromosome, complete genomesodium/alanine symporter family protein1e-40167
NC_012780:284336:3031993031993045991401Eubacterium eligens ATCC 27750 plasmid unnamed, complete sequencealanine or glycine:cation symporter, AGCS family6e-40165
NC_013939:1625491:1629859162985916312051347Deferribacter desulfuricans SSM1, complete genomesodium:alanine symporter6e-40165
NC_019904:3216416:3231886323188632339732088Echinicola vietnamensis DSM 17526 chromosome, complete genomeamino acid carrier protein2e-39164
NC_014225:1403007:1410880141088014122681389Waddlia chondrophila WSU 86-1044 chromosome, complete genomeAlanine or Glycine Cation Symporter (AGCS) family protein1e-37157
NC_015565:2827444:2839379283937928407761398Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeamino acid carrier protein3e-37156
NC_007484:3071329:3075688307568830770581371Nitrosococcus oceani ATCC 19707, complete genomeSodium/alanine symporter5e-37155
NC_015167:569569:5939695939695960412073Cellulophaga lytica DSM 7489 chromosome, complete genomeamino acid carrier protein2e-35150
NC_014210:723719:7286767286767300941419Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,amino acid carrier protein1e-34148
NC_012804:271459:2923762923762939351560Thermococcus gammatolerans EJ3, complete genomeSodium/alanine symporter1e-34148
NC_016051:1681076:1711284171128417128341551Thermococcus sp. AM4 chromosome, complete genomeD-alanine glycine permease3e-34146
NC_016048:3983500:3989366398936639907691404Oscillibacter valericigenes Sjm18-20, complete genomeputative sodium/alanine symporter3e-34146
NC_013235:422565:4351474351474366281482Nakamurella multipartita DSM 44233, complete genomeamino acid carrier protein7e-34145
NC_013946:415028:4366624366624380381377Meiothermus ruber DSM 1279 chromosome, complete genomeamino acid carrier protein4e-33142
NC_011294:1006630:1010470101047010119061437Salmonella enterica subsp. enterica serovar Enteritidis strion:amino acid symporter5e-31135
NC_016048:3983500:3984833398483339862661434Oscillibacter valericigenes Sjm18-20, complete genomeputative sodium/alanine symporter2e-29130
NC_010001:473354:4747394747394761211383Clostridium phytofermentans ISDg, complete genomeamino acid carrier protein5e-28125
NC_002620:803696:8202578202578216181362Chlamydia muridarum Nigg, complete genomesodium/alanine symporter family protein2e-26120
NC_015744:769907:7847917847917860861296Chlamydia trachomatis L2c chromosome, complete genomeamino acid carrier family protein5e-26119
NC_010287:769600:7850167850167863771362Chlamydia trachomatis 434/Bu, complete genomeSodium/alanine symporter protein6e-26119
NC_010280:769639:7850557850557864161362Chlamydia trachomatis L2b/UCH-1/proctitis, complete genomeSodium/alanine symporter protein6e-26119
NC_017439:451535:4669514669514683121362Chlamydia trachomatis E/150 chromosome, complete genomeSodium/alanine symporter protein7e-26119
NC_017431:451551:4669674669674683281362Chlamydia trachomatis E/11023 chromosome, complete genomeSodium/alanine symporter protein7e-26119
NC_013009:122000:1329741329741343081335Neorickettsia risticii str. Illinois, complete genomesodium:alanine symporter family protein3e-1893.6
NC_000117:845141:8476428476428490091368Chlamydia trachomatis D/UW-3/CX, complete genomeD-Ala/Gly Permease2e-1480.5
NC_007798:112840:1217911217911231281338Neorickettsia sennetsu str. Miyayama, complete genomesodium:alanine symporter family protein2e-1480.5
NC_007799:392355:4170834170834183871305Ehrlichia chaffeensis str. Arkansas, complete genomesodium:alanine symporter family protein3e-1067
NC_005295:998000:99999199999110013041314Ehrlichia ruminantium str. Welgevonden, complete genomeputative integral membrane transport protein1e-0861.6
NC_006832:978837:9791839791839805831401Ehrlichia ruminantium str. Welgevonden, complete genomeConserved hypothetical protein. Putative Na+/alanine symporter1e-0861.6