Pre_GI: BLASTP Hits

Some Help

Query: NC_010322:583842:616556 Pseudomonas putida GB-1 chromosome, complete genome

Start: 616556, End: 617554, Length: 999

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:1431200:1486657148665714876731017Shigella sonnei 53G, complete genomeasparaginase1e-39164
NC_014121:2514544:2514544251454425155601017Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completecytoplasmic asparaginase I3e-39162
NC_017047:2260118:2291201229120122922141014Rahnella aquatilis HX2 chromosome, complete genomeasparaginase9e-39160
NC_012997:1335902:1339160133916013401821023Teredinibacter turnerae T7901, complete genomeL-asparaginase 11e-37157
NC_004088:2366000:2389132238913223901481017Yersinia pestis KIM, complete genomecytoplasmic asparaginase I5e-37155
NC_016602:2586044:2588028258802825890411014Vibrio furnissii NCTC 11218 chromosome 1, complete sequenceL-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D6e-37154
NC_008570:3777469:3789179378917937901861008Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeL-asparaginase I8e-37154
NC_013421:2453078:2453078245307824541601083Pectobacterium wasabiae WPP163, complete genomeL-asparaginase, type I4e-35148
NC_006347:700838:7150397150397160881050Bacteroides fragilis YCH46, complete genomeL-asparaginase I5e-32138
NC_016776:701684:7185057185057195541050Bacteroides fragilis 638R, complete genomeputative L-asparaginase I1e-31137
NC_003228:648669:6628706628706638951026Bacteroides fragilis NCTC 9343, complete genomeputative L-asparaginase I3e-31135
NC_008529:264000:2647432647432657501008Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeL-asparaginase4e-31135
NC_015311:2826000:2847417284741728484571041Prevotella denticola F0289 chromosome, complete genomeL-asparaginase5e-28125
NC_016622:82418:1045981045981056831086Azospirillum lipoferum 4B, complete genomeasparaginase2e-27123
NC_006624:1448165:145117314511731452159987Thermococcus kodakarensis KOD1, complete genomeL-asparaginase9e-27121
NC_017045:631761:6472256472256482411017Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,1-alkylgene-acetylglycerophosphocholine esterase3e-25115
NC_020125:1237536:1242121124212112431371017Riemerella anatipestifer RA-CH-2, complete genomehypothetical protein3e-25115
NC_014738:469945:4854094854094864251017Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,1-alkyl-2-acetylglycerophosphocholine esterase3e-25115
NC_013204:929434:9546879546879556941008Eggerthella lenta DSM 2243, complete genomeL-asparaginase, type I2e-23109
NC_012780:284336:304601304601305575975Eubacterium eligens ATCC 27750 plasmid unnamed, complete sequenceL-asparaginase1e-20100
NC_000961:1303446:1309541130954113108571317Pyrococcus horikoshii OT3, complete genomeglutamyl-tRNA(Gln) amidotransferase subunit D3e-2099.4
NC_000868:643548:6538126538126551281317Pyrococcus abyssi GE5, complete genomeglutamyl-tRNA(Gln) amidotransferase subunit D7e-1995.1
NC_009515:307800:3156693156693169791311Methanobrevibacter smithii ATCC 35061, complete genomeglutamyl-tRNA(Gln) amidotransferase subunit D1e-1790.9
NC_015320:211147:2312392312392324891251Archaeoglobus veneficus SNP6 chromosome, complete genomeglutamyl-tRNA(Gln) amidotransferase subunit D1e-1687.4
NC_013926:1166454:1171046117104611722811236Aciduliprofundum boonei T469 chromosome, complete genomeL-asparaginase, type I2e-1583.6
NC_007955:1108000:1109590110959011108371248Methanococcoides burtonii DSM 6242, complete genomeGlutamyl-tRNA(Gln) amidotransferase, subunit E2e-1273.9
NC_008698:310069:3304793304793318341356Thermofilum pendens Hrk 5, complete genomeglutamyl-tRNA(Gln) amidotransferase, subunit D7e-1271.6
NC_012622:1194347:1193017119301711943541338Sulfolobus islandicus Y.G.57.14 chromosome, complete genomeglutamyl-tRNA(Gln) amidotransferase subunit D7e-1271.6
NC_014507:2276000:2298890229889023001341245Methanoplanus petrolearius DSM 11571 chromosome, complete genomeglutamyl-tRNA(Gln) amidotransferase subunit D3e-1066.2