Pre_GI: BLASTP Hits

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Query: NC_010322:583842:613083 Pseudomonas putida GB-1 chromosome, complete genome

Start: 613083, End: 614510, Length: 1428

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012721:1052883:1053832105383210552951464Burkholderia glumae BGR1 chromosome 2, complete genomeL-seryl-tRNA selenium transferase2e-111402
NC_015856:940625:9617809617809632371458Collimonas fungivorans Ter331 chromosome, complete genomeL-seryl-tRNA(Sec) selenium transferase4e-109395
NC_007650:832507:8334218334218349081488Burkholderia thailandensis E264 chromosome II, complete sequenceL-seryl-tRNA selenium transferase6e-106384
NC_010498:3988351:3991534399153439929251392Escherichia coli SMS-3-5, complete genomeL-seryl-tRNA selenium transferase1e-105383
NC_019902:831911:8609598609598624041446Thioalkalivibrio nitratireducens DSM 14787, complete genomeL-seryl-tRNA(Sec) selenium transferase2e-105383
CP002516:119935:1423751423751437661392Escherichia coli KO11, complete genomeL-seryl-tRNA selenium transferase3e-102372
NC_016902:119935:1423751423751437661392Escherichia coli KO11FL chromosome, complete genomeL-seryl-tRNA selenium transferase3e-102372
NC_012947:126596:1452341452341466251392Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeselenocysteine synthase8e-102371
NC_010468:111504:1335761335761349671392Escherichia coli ATCC 8739, complete genomeL-seryl-tRNA(Sec) selenium transferase8e-102371
NC_009800:3787320:3789161378916137905521392Escherichia coli HS, complete genomeL-seryl-tRNA selenium transferase8e-102371
NC_004337:3590323:3734155373415537355461392Shigella flexneri 2a str. 301, complete genomeselenocysteine synthase1e-101370
NC_013282:116649:1362901362901377141425Cronobacter turicensis, complete genomeL-seryl-tRNA(Sec) selenium transferase6e-101368
NC_012559:731859:7346817346817361141434Laribacter hongkongensis HLHK9, complete genomeSelenocysteine synthase4e-98358
NC_004347:103967:1142381142381156591422Shewanella oneidensis MR-1, complete genomeselenocysteine synthase7e-91334
NC_002663:1988000:1992896199289619942781383Pasteurella multocida subsp. multocida str. Pm70, complete genomeselenocysteine synthase3e-89329
NC_009053:1785447:1787279178727917886641386Actinobacillus pleuropneumoniae L20, complete genomeL-seryl-tRNA(Sec) selenium transferase1e-88327
NC_016513:974402:9730119730119744051395Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeselenocysteine synthase2e-88327
NC_013416:668152:6667616667616681551395Aggregatibacter actinomycetemcomitans D11S-1, complete genomeL-seryl-tRNA selenium transferase2e-88327
NC_010939:1809446:1811278181127818126631386Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeL-seryl-tRNA(Sec) selenium transferase9e-88324
NC_010718:1229355:1230422123042212318521431Natranaerobius thermophilus JW/NM-WN-LF, complete genomeL-seryl-tRNA(Sec) selenium transferase6e-82305
NC_014844:1270618:1317169131716913185811413Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeL-seryl-tRNA selenium transferase7e-79295
NC_014972:2659388:2669336266933626707811446Desulfobulbus propionicus DSM 2032 chromosome, complete genomeL-seryl-tRNA(Sec) selenium transferase1e-77290
NC_008751:607209:6109826109826124511470Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeL-seryl-tRNA(Sec) selenium transferase4e-76285
NC_015873:790961:8094818094818108781398Megasphaera elsdenii DSM 20460, complete genomeL-seryl-tRNA(Sec) selenium transferase4e-76285
NC_003869:1812642:1816203181620318176001398Thermoanaerobacter tengcongensis MB4, complete genomeselenocysteine synthase7e-75281
NC_016012:396910:4075114075114088991389Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeL-seryl-tRNA(Sec) selenium transferase2e-73276
NC_016584:2244966:2255807225580722571891383Desulfosporosinus orientis DSM 765 chromosome, complete genomeseryl-tRNA(Sec) selenium transferase4e-71268
NC_014623:4535544:4555837455583745572371401Stigmatella aurantiaca DW4/3-1 chromosome, complete genomel-seryl-tRNA selenium transferase2e-70266
NC_016148:1175999:1194571119457111959711401Thermovirga lienii DSM 17291 chromosome, complete genomeL-seryl-tRNA(Sec) selenium transferase2e-69263
NC_014633:713285:7132857132857146731389Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequenceL-seryl-tRNA selenium transferase9e-69261
NC_000918:707801:7149287149287162861359Aquifex aeolicus VF5, complete genomeselenocysteine synthase3e-65249
NC_013894:672840:6967136967136980591347Thermocrinis albus DSM 14484 chromosome, complete genomeL-seryl-tRNA selenium transferase2e-58227
NC_016024:156000:1731221731221745551434Candidatus Chloracidobacterium thermophilum B chromosome chromosomeseryl-tRNA(sec) selenium transferase7e-54211
NC_015424:2357600:2389841238984123913191479Aeromonas veronii B565 chromosome, complete genomeL-seryl-tRNA selenium transferase7e-52205
NC_008570:2768795:2791890279189027933261437Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeL-seryl-tRNA selenium transferase1e-50201
NC_009380:636000:6568396568396581341296Salinispora tropica CNB-440 chromosome, complete genomeselenocysteine synthase1e-49197
NC_014150:582093:5974345974345987891356Brachyspira murdochii DSM 12563 chromosome, complete genomeL-seryl-tRNA selenium transferase6e-44179
NC_012225:377441:3969463969463982921347Brachyspira hyodysenteriae WA1, complete genomeselenocysteine synthase1e-37157
NC_017378:1489818:1493117149311714942771161Helicobacter pylori Puno120 chromosome, complete genomeselenocysteine synthase7e-27122
NC_017354:1465925:1465925146592514670851161Helicobacter pylori 52 chromosome, complete genomeselenocysteine synthase1e-26121
NC_014555:1477934:1477934147793414790941161Helicobacter pylori PeCan4 chromosome, complete genomeselenocysteine synthase4e-25116
NC_017367:1505780:1508599150859915097591161Helicobacter pylori F57, complete genomeselenocysteine synthase1e-24115
NC_017365:1466500:1466515146651514676751161Helicobacter pylori F30, complete genomeselenocysteine synthase1e-24114
NC_011498:1571840:1571840157184015730121173Helicobacter pylori P12, complete genomeselenocysteine synthase5e-24112
NC_018939:1583653:1587330158733015884901161Helicobacter pylori 26695 chromosome, complete genomeselenocysteine synthase5e-23109
NC_000915:1583967:1587307158730715884671161Helicobacter pylori 26695, complete genomeselenocysteine synthase5e-23109
NC_017371:1601452:1604318160431816054781161Helicobacter pylori Gambia94/24 chromosome, complete genomeselenocysteine synthase8e-23108
NC_014831:1843835:1869139186913918702541116Thermaerobacter marianensis DSM 12885 chromosome, complete genomepyridoxal phosphate-dependent enzyme9e-1168.6