Pre_GI: BLASTP Hits

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Query: NC_010322:583842:612066 Pseudomonas putida GB-1 chromosome, complete genome

Start: 612066, End: 612986, Length: 921

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015856:940625:963238963238964224987Collimonas fungivorans Ter331 chromosome, complete genomeformate dehydrogenase formation protein1e-30134
NC_010067:3538169:356127735612773562206930Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-30132
NC_012721:1052883:105288310528831053818936Burkholderia glumae BGR1 chromosome 2, complete genomehypothetical protein4e-27122
NC_007650:832507:832507832507833469963Burkholderia thailandensis E264 chromosome II, complete sequenceformate dehydrogenase accessory protein FdhE5e-2098.6
NC_008577:2511326:251132625113262512225900Shewanella sp. ANA-3 chromosome 1, complete sequenceformate dehydrogenase accessory protein FdhE5e-1995.5
NC_004347:103967:113272113272114180909Shewanella oneidensis MR-1, complete genomefdhE protein5e-1685.1