Pre_GI: BLASTP Hits

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Query: NC_010322:583842:611405 Pseudomonas putida GB-1 chromosome, complete genome

Start: 611405, End: 612061, Length: 657

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008027:558507:580763580763581419657Pseudomonas entomophila L48, complete genomeformate dehydrogenase-O, cytochrome B556 (FDO) subunit6e-108389
NC_015856:940625:964197964197964838642Collimonas fungivorans Ter331 chromosome, complete genomeformate dehydrogenase O subunit gamma6e-69260
NC_010067:3538169:356064535606453561280636Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein4e-53207
NC_015968:2110175:212439721243972125044648Enterobacter asburiae LF7a chromosome, complete genomeformate dehydrogenase subunit gamma2e-51202
NC_012912:2998511:301830830183083018949642Dickeya zeae Ech1591, complete genomeformate dehydrogenase, gamma subunit3e-48191
NC_004741:1823000:182303618230361823689654Shigella flexneri 2a str. 2457T, complete genomeformate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit8e-47186
NC_008258:1784637:178463717846371785290654Shigella flexneri 5 str. 8401, complete genomeformate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit8e-47186
NC_004337:1783645:178531317853131785966654Shigella flexneri 2a str. 301, complete genomeformate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit8e-47186
NC_011750:1809943:182851818285181829171654Escherichia coli IAI39 chromosome, complete genomeformate dehydrogenase-N subunit gamma8e-47186
NC_007384:1737885:173957517395751740228654Shigella sonnei Ss046, complete genomeformate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit8e-47186
NC_002695:2056545:207276020727602073413654Escherichia coli O157:H7 str. Sakai, complete genomenitrate-inducible formate dehydrogenase-N cytochrome B556(Fdn) gamma subunit8e-47186
NC_010498:1700447:169980116998011700454654Escherichia coli SMS-3-5, complete genomeformate dehydrogenase, gamma subunit8e-47186
NC_002655:2015000:201506020150602015713654Escherichia coli O157:H7 EDL933, complete genomeformate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit8e-47186
NC_011353:1971145:198736019873601988013654Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeformate dehydrogenase-N subunit gamma8e-47186
NC_013008:1971662:198633619863361986989654Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeformate dehydrogenase-N subunit gamma8e-47186
NC_013941:1857724:187722418772241877877654Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeformate dehydrogenase-N gamma subunit8e-47186
NC_016822:1818897:181889718188971819550654Shigella sonnei 53G, complete genomeformate dehydrogenase-N subunit gamma8e-47186
NC_017328:1835108:183863318386331839286654Shigella flexneri 2002017 chromosome, complete genomeFormate dehydrogenase-N gamma subunit8e-47186
NC_004347:103967:112631112631113272642Shewanella oneidensis MR-1, complete genomeformate dehydrogenase, nitrate-inducible, cytochrome b556 subunit7e-32137
NC_000918:707801:724841724841725476636Aquifex aeolicus VF5, complete genomeformate dehydrogenase gamma subunit2e-28125
NC_014311:1106871:1106871110687111080251155Ralstonia solanacearum PSI07 chromosome, complete genomeformate dehydrogenase, cytochrome b556(fdo) subunit (fdoI)2e-1789
NC_008825:1258500:1258512125851212596781167Methylibium petroleiphilum PM1, complete genomeformate dehydrogenase subunit C precursor4e-1787.8
NC_010505:3376322:3383838338383833848751038Methylobacterium radiotolerans JCM 2831, complete genomeformate dehydrogenase, gamma subunit7e-1580.5
NC_015499:1167932:117791111779111178561651Thermodesulfobium narugense DSM 14796 chromosome, complete genomeformate dehydrogenase, gamma subunit9e-1477
NC_013960:1587761:1643214164321416442751062Nitrosococcus halophilus Nc4 chromosome, complete genomeformate dehydrogenase, gamma subunit4e-1375.1
NC_015499:1167932:117225911722591172912654Thermodesulfobium narugense DSM 14796 chromosome, complete genomeformate dehydrogenase, putative2e-1169.3
NC_010334:1701957:170353817035381704218681Shewanella halifaxensis HAW-EB4, complete genomeformate dehydrogenase, putative6e-0960.8
NC_015681:401084:4165934165934181761584Thermodesulfatator indicus DSM 15286 chromosome, complete genomehypothetical protein2e-0858.9
NC_008340:682469:685509685509686237729Alkalilimnicola ehrlichei MLHE-1, complete genomeformate dehydrogenase gamma subunit4e-0755.1
NC_011830:4645453:466684946668494667604756Desulfitobacterium hafniense DCB-2, complete genomehypothetical protein5e-0754.7